Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00515 ATGGCTTCTGAGCTCCAAAAAGGAGTGCCAGAAAACCTTAAAAAACAGCTTGCTCTAGCTGTTAGAAGCATTCAATGGAGCTATGCGATTTTCTGGTCGATTTCAGCTCAACAACCAGGATGTATTGCTGTATTTTGTAGGGTCTTGGAGTGGGGTGATGGATTTTACAATGGAGATATTAAGACAAGAAAAACAGTTCAGGCAAAGGAACTAGACGCCAATCGAATTGTTTTTCAAAGGAGCAAACAATTAAGAGAGCTATACGAGTCTCTTTCTATAGGAGAAGCAAGCCCCCAAGTGAAACGGCCTTCGGCTGCATTATCTCCCGAAGATCTCAGCGATGCAGAATGGTATTACTTGGTTTGCATGTCCTTCATATTCAACATTGGACAAGGATTGCCTGGGAGAACATATATTTCTGGTCAACCCATCTGGCTGTGCAATGCTCATTCTGCAGATAGCAAAGTTTTCAGCCGCTCTCTGCTGGCGAAGCGTAATATTTTCCGTTTTACTGTGCAGACAATTATTTGCTTTCCCTTTTTAGATGGTGTGGTGGAGCTAGGAGTGACTGATTTGGTTTTGGAGGACCCTGGCCTCATTCAACACCTTAAAACTTCTTTTTTGGACACTCCATATTCATTGAATTCTTCGACCATAAAATCGAGAAACGAAGAAACTATTATGAGTGGTGCGTTCGATCACAAGATTTTTGAAAGTAAAGAGATCTCGGCTGTAGGATGTGCAGATCTCGATATGATTTCTCCTAGCGACGGTTCAAATCGAATGGAGGGCAATCAACCTGCTGAAGACTCTTTTATCGGTGAAGGGCGGAGTAGAGGAGCTTCTCAAGCGCAAAGCTGGCAATTGATGGATGACGAGATAAGTAACTGCTTCCATCATTCGATAAATTCTAGCGATTGTATATCTCAAACATTTGTTGAGCCCGAAAAAGTGAACTCCAATCGTGGTGGAGAGATCTTCGACAAAAACAACTTGCCGAATCAAGAGTATCATCACCCAAAACTAACCTCGCGGGACCCGCGGAAGGACGATCTACATTATCAAGGCGTTCTTGCCACCCTGTTCAAGAGCTCGAGTCAGTTAATTTTGGGATCACCCGCTCAAAATTGTCGTAAAGATTCTAGCTTTATCGGTTGGAAAAGAGGCCTATCGAATTCACAAATTTCGAGAGTCCCTACCCCGCAAATTCGATTGAAGAAGATTTTGTTTGAAGTTCCGCGATTGCTTGCTCTTATTTCTGCTGCCTCTCCCGAGGGTTGTGGTTACAAAGACGAAATTCCGATACAAGAAGTCGATAAAATCGAAAAAAACCATGCACTATCGGAGAAGAAGCGAAGACATAAACTCAACGAAAGATTTTTCGTTTTAAGATCCATAGTCCCTTCAATTAGCAAGGACGATAAAGTTACCATACTTGACGAAGCAATCGACTACGTGAAGCAGCTCGAACGAAGAGTTAAAGAGTTGGAATCTGAGCGAGAAGTACTGGAATCGGAGGGAAGAACGAGTAGGAAACCTCAAGATATAGCAGAGAGAACATACGACAACTATGGAAATGACGAAAAACCGAGTAGTAATACGAAGAAATCCCCAATAACCAAGAGGAAGGCTTGTGATGTGATCGAAACGGAAACGGAGACGGAGACGGACGAAAGCTTGAACGAGAATATAAACGTGTCTGTAAGCAACAAGATCGTGACGATTAGAATGAGGTGTGCTTGGAGAGATGGTATTTTGCTGGATATCATGGATGTTACAAGCAATTTTCATTTGGAGTCTCATTCAGTTCAGTCATCTACTACAGATGGGATTCTTTCTCTTTCGATCAAGTCAAAGGTAAGTAGCTTGATTTCATTTGTTCCATCAAAGCTTTCAAATGGGTGTGATTCTTCTGAAAATAACTTATCTCCACACGTGCAGATTAACTCGTCGCCGGCTGCTTCGGCTGGGACGATTCAACAAGCTCTCCGGAAGGTTGCTCGGAAATGCTGA 2013 42.77 MASELQKGVPENLKKQLALAVRSIQWSYAIFWSISAQQPGCIAVFCRVLEWGDGFYNGDIKTRKTVQAKELDANRIVFQRSKQLRELYESLSIGEASPQVKRPSAALSPEDLSDAEWYYLVCMSFIFNIGQGLPGRTYISGQPIWLCNAHSADSKVFSRSLLAKRNIFRFTVQTIICFPFLDGVVELGVTDLVLEDPGLIQHLKTSFLDTPYSLNSSTIKSRNEETIMSGAFDHKIFESKEISAVGCADLDMISPSDGSNRMEGNQPAEDSFIGEGRSRGASQAQSWQLMDDEISNCFHHSINSSDCISQTFVEPEKVNSNRGGEIFDKNNLPNQEYHHPKLTSRDPRKDDLHYQGVLATLFKSSSQLILGSPAQNCRKDSSFIGWKRGLSNSQISRVPTPQIRLKKILFEVPRLLALISAASPEGCGYKDEIPIQEVDKIEKNHALSEKKRRHKLNERFFVLRSIVPSISKDDKVTILDEAIDYVKQLERRVKELESEREVLESEGRTSRKPQDIAERTYDNYGNDEKPSSNTKKSPITKRKACDVIETETETETDESLNENINVSVSNKIVTIRMRCAWRDGILLDIMDVTSNFHLESHSVQSSTTDGILSLSIKSKVSSLISFVPSKLSNGCDSSENNLSPHVQINSSPAASAGTIQQALRKVARKC 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5197591 5200662 - Bda024970.2 Bda08g00515 11371

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00515 670 MobiDBLite consensus disorder prediction 324 349 - -
Bda08g00515 670 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 443 507 IPR036638 GO:0046983
Bda08g00515 670 Coils Coil 479 506 - -
Bda08g00515 670 MobiDBLite consensus disorder prediction 256 276 - -
Bda08g00515 670 Pfam Helix-loop-helix DNA-binding domain 444 490 IPR011598 GO:0046983
Bda08g00515 670 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 440 489 IPR011598 GO:0046983
Bda08g00515 670 MobiDBLite consensus disorder prediction 497 542 - -
Bda08g00515 670 MobiDBLite consensus disorder prediction 332 349 - -
Bda08g00515 670 PANTHER TRANSCRIPTION FACTOR TT8 5 633 - -
Bda08g00515 670 MobiDBLite consensus disorder prediction 497 525 - -
Bda08g00515 670 SMART finulus 446 495 IPR011598 GO:0046983
Bda08g00515 670 PANTHER TRANSCRIPTION FACTOR EGL1 5 633 - -
Bda08g00515 670 Gene3D - 440 515 IPR036638 GO:0046983
Bda08g00515 670 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 13 207 IPR025610 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00515 - - - qsu:112035245 687.952
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda07g00484 Bda08g00515 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00515 Bda-Chr8:5197591 Bda07g00099 Bda-Chr7:1167675 1.23E-15 dispersed
Bda08g00368 Bda-Chr8:3763014 Bda08g00515 Bda-Chr8:5197591 1.11E-119 transposed
Bda12g00021 Bda-Chr12:121931 Bda08g00515 Bda-Chr8:5197591 7.11E-86 transposed
Bda06g00113 Bda-Chr6:1833650 Bda08g00515 Bda-Chr8:5197591 2.46E-169 wgd
Bda07g00480 Bda-Chr7:6046376 Bda08g00515 Bda-Chr8:5197591 1.58E-90 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g1 . . . Bda08g00515 . Bpe07g00104 . Bma14g00608 . Cmo16g00658 Cma02g01438 . Car02g01208 . . . Cpe05g00646 . . . . . . . Cla07g00786 Cam07g0848 Cec07g0901 Cco07g0883 Clacu07g0823 Cmu07g0826 Cre07g1184 . . . . . Csa05g00266 . . . . Bda07g00484 . . Bpe11g00661 . Bma12g00073 . Cmo02g01473 Cmo15g01132 . Cma16g00602 Car06g00910 . . Cpe13g00146 Bhi12g00184 . . . . . . Cla01g00250 Cam01g0255 Cec01g0247 Cco01g0261 Clacu01g0253 Cmu01g0243 Cre09g2266 Lsi09g00241 . Chy07g01225 .
Vvi15g865 . . . Bda08g00515 . . . . . Cmo17g00410 . . . . . . . . . . . . . . . . . . . . . Cone14ag0354 Cone15ag0391 Cone11ag0423 Cone18ag1082 . Csa06g00053 Chy11g01641 . . . . . . . . . Sed09g0059 . . . Cma17g00431 . Car17g00395 . Cpe12g00368 Bhi12g01851 Tan06g2039 Cmetu11g2334 . Hepe03g0553 . Lcy13g0686 Cla06g00348 Cam06g0377 Cec06g0387 Cco06g0378 Clacu06g0369 Cmu06g0368 Cre06g1139 Lsi09g01563 . . Cme11g02159
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003574 4 2 3 2 2 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 1 1 1 1 1 1 1 3 2 2 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16267 PF14215 bHLH-MYC_N 1.70E-49 CL0161 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00515 Bda_Chr08 FPKM 36.624191 34.29855 26.104635 27.785589 18.355751 21.546064 20.286892 29.861143 31.225716