Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00520 ATGGATGGGAGAGAAGCTATGGCTCTTTCTGGTGGTTCAGCTTCATATTACATTCACAGAGGAGGTTTTAGTGGGCCTGGTTTGGGAAATCAGACCCCCAGTCTGCACTCCACACAGGATTTCACGCCATTTTCGAACTCCACCATTCCCACTCAGCCAAATGCTCGGTGTGGCTCAGTAGGACCGGCGTTTTCAGTTGAGTCTTCGCAGGGGAATTACTCTCTTGGCATTAATGTGGGAGCGTCAGCCGGATCACCCGCTAGTGAACCAGTGCGGAAGAAAAGAGGTAGGCCTCGGAAATACGTACCTGACGGGCCAGTTTCACTGGGACTGTCTCCGATGTCTGTTGATTCCAATCAAAGCTCTGGTCCGAATTCAGTGAACCCTAAACGGCCTAGGGGAAGACCGCCTGGTTCTGGAAGGAAACAACAATTAGCGTTGCTTGGTGAATGGATGGACAGTTCAGCTGGACAAGCTTTTGCGCCTCATGTCATGCACATTGGAGCAGGAATGGACATTGTTGCAAAAATATTGTCATTTTCGCAACAGAAGGGAAGAGCTGTTTGCATAATGTCTGGAAATGGTACAGTTTCTTCGATGACACTTCGTCAACCCGCATCCCCGGAGGTGGGCCGAAACTTTGAGGGGCGATTCCAGATATTGTGTTTATCGGGTTCTTACTTGATCTCTAAAGATGGAGCCCCGCAAAATCGAACTGGGGGAGTAAGTGTTTCTCTTGCCAGTCCTGACGGTCAGGTGATTGGCGGCGCTGTTGATTCGCTCATTGCAGCTGCCCCTGTTCAGGTAATAGTATCGAGTTTTGTTTATGGCGGTTCAAAGACAAAGAAGAAGAACAAGCAAGTTTCCGCTCCAAAAAGTGATGACAGTTCCGAGCCTCAACCCAGTGATGAATTAGCTCCGCAGTCAACCACTCCCGATCAAACTTACGCTCCATCTACAACCGGGTTTTGGCCAGGTTCCCGTCCCGTCCTCAAAAACCCTCATTCCGGCATCGATTTAAGGCGAGGATGA 1032 49.81 MDGREAMALSGGSASYYIHRGGFSGPGLGNQTPSLHSTQDFTPFSNSTIPTQPNARCGSVGPAFSVESSQGNYSLGINVGASAGSPASEPVRKKRGRPRKYVPDGPVSLGLSPMSVDSNQSSGPNSVNPKRPRGRPPGSGRKQQLALLGEWMDSSAGQAFAPHVMHIGAGMDIVAKILSFSQQKGRAVCIMSGNGTVSSMTLRQPASPEVGRNFEGRFQILCLSGSYLISKDGAPQNRTGGVSVSLASPDGQVIGGAVDSLIAAAPVQVIVSSFVYGGSKTKKKNKQVSAPKSDDSSEPQPSDELAPQSTTPDQTYAPSTTGFWPGSRPVLKNPHSGIDLRRG 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5238190 5240372 + Bda024975.1 Bda08g00520 11376

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00520 343 Pfam Plants and Prokaryotes Conserved (PCC) domain 162 275 IPR005175 -
Bda08g00520 343 MobiDBLite consensus disorder prediction 292 322 - -
Bda08g00520 343 CDD DUF296 162 274 IPR005175 -
Bda08g00520 343 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 341 - -
Bda08g00520 343 MobiDBLite consensus disorder prediction 112 128 - -
Bda08g00520 343 MobiDBLite consensus disorder prediction 282 343 - -
Bda08g00520 343 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 341 IPR039605 GO:0003680
Bda08g00520 343 Gene3D - 162 290 - -
Bda08g00520 343 MobiDBLite consensus disorder prediction 27 55 - -
Bda08g00520 343 SUPERFAMILY AF0104/ALDC/Ptd012-like 158 276 - -
Bda08g00520 343 ProSiteProfiles PPC domain profile profile. 157 296 IPR005175 -
Bda08g00520 343 PRINTS AT-hook-like domain signature 92 102 IPR017956 GO:0003677
Bda08g00520 343 PRINTS AT-hook-like domain signature 128 139 IPR017956 GO:0003677
Bda08g00520 343 MobiDBLite consensus disorder prediction 77 142 - -
Bda08g00520 343 MobiDBLite consensus disorder prediction 20 55 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00520 - - - zju:107429897 411.379
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda08g00520 Bda11g00244 CCT
Bda08g00520 Bda13g00351 CCT
Bda08g00520 Bda13g00351 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00109 Bda-Chr6:1516596 Bda08g00520 Bda-Chr8:5238190 2.61E-49 dispersed
Bda06g01048 Bda-Chr6:36839824 Bda08g00520 Bda-Chr8:5238190 1.54E-16 dispersed
Bda08g00520 Bda-Chr8:5238190 Bda15g00752 Bda-Chr15:11110255 3.86E-52 dispersed
Bda08g00520 Bda-Chr8:5238190 Bda11g00244 Bda-Chr11:2898066 7.59E-92 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g329 Blo02g01107 Blo03g00211 . Bda08g00520 Bpe05g00642 Bpe07g00112 . . . . Cma02g01007 Cma15g01221 Car02g00752 Car15g01102 . . Cpe05g00713 . . . . . . . . . . . . . . Cone8ag0311 Cone12ag0311 Cone6ag0774 . . Csa05g00288 Chy09g01218 . . . . . . . Bma05g00817 Bma12g00188 . Cmo02g01022 Cmo15g01287 . . . . Cpe08g00855 . Bhi12g00246 . . . . . Lcy12g1658 Cla01g00271 Cam01g0279 Cec01g0271 Cco01g0286 Clacu01g0278 Cmu01g0266 Cre09g2242 Lsi09g00265 . . Cme09g01755
Vvi15g470 . . . Bda08g00520 . . . . . . Cma06g00747 . Car06g00668 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00244 . Bpe13g00952 . . . . Cmo06g00770 . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi15g896 . . . Bda08g00520 Bpe14g00976 . . . Cmo08g00884 Cmo17g00404 . . . . . . . . . . . . . . . . . . . . . Cone14ag0350 Cone15ag0383 Cone11ag0417 Cone18ag1088 . Csa06g00046 Chy11g01635 . Blo02g00353 . . Bda13g00351 . . Bma02g01062 . Sed01g3886 . . Cma08g00912 Cma17g00425 Car08g00794 Car17g00389 Cpe17g00356 Cpe12g00363 Bhi12g01841 Tan06g2055 Cmetu09g1891 . . . . Cla06g00354 Cam06g0384 Cec06g0394 Cco06g0387 Clacu06g0375 Cmu06g0374 Cre06g1146 Lsi09g01558 . . Cme11g02151
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005578 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 2 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00520 Bda_Chr08 FPKM 5.416346 6.784316 5.035251 5.258409 7.15275 7.197333 7.973917 7.272025 6.766717