Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00526 ATGAGGCAAGCTGGTTTATATTCCGGGCTGTTGTGCGGGGGAATAAGCGGGAAAACGGGGCCGCACTCGCTGCCGTTGGCGAGGATAAAGAAGATAATGAAGAGTTCGGGGGAGGAGGTGAAGATGATATCCGGCGAGGCTCCGATCGTGTTTTCGAAGGCGTGCGAGCTTTTCATCGAGGAGCTTACTCGGAGGTCGTGGAAGGTGGCTATGGAGAAGAAGAGGAAGACGGTTCATAAAGATGACGTGGCTTCAGCTGTTTTAGCCACTGACTTGTTTGATTTTCTTATCGGTTTGGTTTCTGAATCCGATCGCGTTTCTCTGCAAATGGCGTCTTCTGCAGAGATGGAAAGCTCTTAG 360 50.83 MRQAGLYSGLLCGGISGKTGPHSLPLARIKKIMKSSGEEVKMISGEAPIVFSKACELFIEELTRRSWKVAMEKKRKTVHKDDVASAVLATDLFDFLIGLVSESDRVSLQMASSAEMESS 119
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5273937 5274296 + Bda024981.1 Bda08g00526 11382

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00526 119 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 109 - -
Bda08g00526 119 SUPERFAMILY Histone-fold 18 96 IPR009072 GO:0046982
Bda08g00526 119 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
Bda08g00526 119 Gene3D Histone, subunit A 15 101 IPR009072 GO:0046982
Bda08g00526 119 PANTHER HAP5 SUBUNIT OF HAP COMPLEX 1 109 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00526 - - - adu:107462326 177.178
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00526 Bda-Chr8:5273937 Bda14g01357 Bda-Chr14:15854238 1.60E-30 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g346 Blo02g01104 . . Bda08g00526 Bpe05g00636 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme07g01623 . . . . . . Bma05g00812 . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00602 Chy07g01210 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014449 1 1 2 1 1 0 1 0 0 1 0 0 0 1 1 0 0 1 1 0 1 1 1 1 0 1 1 1 1 1 21
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16268 PF00808 CBFD_NFYB_HMF 1.70E-20 CL0012 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00526 Bda_Chr08 FPKM 3.933371 5.153958 3.730904 3.890129 6.022264 7.541557 6.453043 8.726116 9.317103