Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00528 ATGGGGAGCTTGGAGCAGACGATTCTGGTGACCGGTGGCGCGGGGTTCATTGGCAGCCATACGGCCGTTCAGCTTCTGAACGAGGGGTTTAGAGTTTGCATTATTGATAATCTTGATAACTCTGTTGCTGAAGCTGTTGATAGGGTTAGAGAGTTGGTCGGTTCCCATCTTTCGCAGAAACTTGAATTTCGACTGGGAGATCTTAGGAATAAGGATGACTTGGAAGAGCTATTTTCTCAGTCAAGCAGATTTGATGCTGTCATACATTTTGCTGGCCTGAAAGCCGTGGGGGAGAGCGTTGCTTATCCTATGCGTTATTTTGATAACAATTTGATTGGCACGATCAATCTCTTTGAGGTTATGCAAAAATACGATTGTAAGAAGATGGTTTTCTCATCATCGTCAACTGTTTATGGCCAACCTGAGGAAATACCATGCGTAGAGGATGCCAAGTTGGTGGCTTTGAGTCCTTATGGACGGACTAAGCTGTTCTTGGAAGAAATAGCTCGCGACATTCATAAGGCAGATGAAGATTGGAGAATAATTTTACTGAGGTACTTCAATCCAGTTGGGGCTCACGAAAGTGGTAAAATTGGTGAAGATCCAAAGGGTATACCAAACAATCTTATGCCTTATATACAGCAAGTAGCAGTTGGCAGACTCCCTGAGCTTAACGTCTATGGCCATGATTATCCAACAACGGACGGCACAGCAATTAGAGATTATATCCATGTTATGGACTTGGCAGACGGCCACGTTGCAGCTCTTAGGAAGCTTTTTACAGCAGAAGAAATAGGGTGCAGGGCCTACAACTTGGGAACGGGACAGGGTACATCGGTACTTGAAATGGTCGCTGCATTTGAGAAGGCCTCTGGCAAGAAAATACCCATCAAGCTCTGTCCCAGGAGGCCTGGAGATGCTACTCAAGTTTATGCTTCTATTGAGAAAGCTAAAACAGAACTCGGTTGGAAGACCAAGTATGGGGTAGAAGAAATGTGCAGGGATCAATGGAAGTGGGTAAGTCAAAATCCATGGGGATACCAGTCCAAGCCTTGA 1056 45.17 MGSLEQTILVTGGAGFIGSHTAVQLLNEGFRVCIIDNLDNSVAEAVDRVRELVGSHLSQKLEFRLGDLRNKDDLEELFSQSSRFDAVIHFAGLKAVGESVAYPMRYFDNNLIGTINLFEVMQKYDCKKMVFSSSSTVYGQPEEIPCVEDAKLVALSPYGRTKLFLEEIARDIHKADEDWRIILLRYFNPVGAHESGKIGEDPKGIPNNLMPYIQQVAVGRLPELNVYGHDYPTTDGTAIRDYIHVMDLADGHVAALRKLFTAEEIGCRAYNLGTGQGTSVLEMVAAFEKASGKKIPIKLCPRRPGDATQVYASIEKAKTELGWKTKYGVEEMCRDQWKWVSQNPWGYQSKP 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5278490 5280605 + Bda024983.1 Bda08g00528 11384

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00528 351 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 348 IPR036291 -
Bda08g00528 351 TIGRFAM galE: UDP-glucose 4-epimerase GalE 8 344 IPR005886 GO:0003978|GO:0006012
Bda08g00528 351 PANTHER BIFUNCTIONAL UDP-GLUCOSE 4-EPIMERASE AND UDP-XYLOSE 4-EPIMERASE 1 3 350 - -
Bda08g00528 351 CDD UDP_G4E_1_SDR_e 7 341 IPR005886 GO:0003978|GO:0006012
Bda08g00528 351 PRINTS Nucleotide sugar epimerase signature 240 255 - -
Bda08g00528 351 PRINTS Nucleotide sugar epimerase signature 267 282 - -
Bda08g00528 351 PRINTS Nucleotide sugar epimerase signature 306 323 - -
Bda08g00528 351 Gene3D - 198 340 - -
Bda08g00528 351 Pfam GDP-mannose 4,6 dehydratase 9 335 IPR016040 -
Bda08g00528 351 PANTHER UDP-GLUCOSE 4-EPIMERASE 3 350 - -
Bda08g00528 351 Gene3D - 8 280 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00528 K01784 galE, GALE; UDP-glucose 4-epimerase [EC:5.1.3.2] - ming:122081244 618.231
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g01122 Bda-Chr4:62047012 Bda08g00528 Bda-Chr8:5278490 9.83E-139 dispersed
Bda06g00081 Bda-Chr6:808461 Bda08g00528 Bda-Chr8:5278490 6.80E-75 dispersed
Bda06g00097 Bda-Chr6:1117777 Bda08g00528 Bda-Chr8:5278490 4.19E-36 dispersed
Bda06g00151 Bda-Chr6:2218264 Bda08g00528 Bda-Chr8:5278490 6.05E-169 dispersed
Bda08g00463 Bda-Chr8:4825635 Bda08g00528 Bda-Chr8:5278490 1.08E-98 dispersed
Bda08g00528 Bda-Chr8:5278490 Bda13g01018 Bda-Chr13:11939051 2.89E-61 dispersed
Bda03g00143 Bda-Chr3:1220246 Bda08g00528 Bda-Chr8:5278490 6.95E-07 transposed
Bda06g00080 Bda-Chr6:802342 Bda08g00528 Bda-Chr8:5278490 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g383 . . . Bda08g00528 . . . . . Cmo16g00593 . . . . . Cpe14g00457 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma16g00541 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009817 2 1 2 2 2 1 1 1 0 1 1 1 1 1 1 1 1 2 1 0 0 1 1 1 1 0 1 2 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00528 Bda_Chr08 FPKM 4.225707 4.88912 27.499329 27.829046 29.122917 31.028557 27.80283 4.565524 4.397305