Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda08g00529 | ATGGCTTCCTCCGAAGGCCTCGTCGACTCGACGCCGTTTCTGGCGAATCATAGGCGGTCTTCTAGCGAAACGAATTCCAGCAGTCGATTTGTTCAGAGGCAGAGCCTGCGTCAGGCGGCGAGGTTTTTGGGGCAAGCGAGCAGTCGGAGGACGTTGCGCGAGTCCTCGATGCGGGTGAGAGAGACTGCAGCGGAGCAATTGGAGGAGAGGCAGAGTGATTGGGCGTATTCCAAACCGATTGTGATTCTAGATATCGTTTGGAATTTCGCATTTGTGGCCGTGGCTGCTATAATACTGGTTCTGAGCCGTACGGAGTCTCCGAATGTGCCATTGAGACTGTGGCTCGCGGGATATGGTTTCCAATGCGTTCTTCATATAGTGTGTGTTTGTTACGAATATAGACGTCGGAGACAACGGCTCCAAATTCACATGGTTAATTCTGTGGGAGACGGAAACCGGACTCCCGGGGGATCAAGTTCCGGTTCGAGGCAGAATTTATCCTTGGGGCAATTAAATGAGGAGGACCCGAGCGTTGCAAAACATCTCGAGTCTGCAAATACGATGTTTTCGTTTGTCTGGTGGATTGTTGGATTCTATTGGGTCTCAGCTGGAAGTCAAGGTTTAGCTCATGCCTCTCCTCTGCTTTACTGGCTGTGCCTAATCTTTTTAGGATTCGATGTGTTTTTCGTCGTTTTCTGCGTTGCATTGGCCTGTGTAATCGGCATTGCTGTTTGTTGCTGTCTCCCGTGTATTATTGCGCTTCTATATGCTGTGGCTGACCAGGAAGGAGCGTCAAGAGAAGATATAGATCAACTGTCTAAATTCAAATTCAGAAAATGTGATGATTCCGGTGAGCTAACCAGGGATGTGCAAGAATCTTCGGGAGGAATAATGACAGAATGTGACACTGATTCGCCGATCGAACATGTTCTCTCGCAGCAAGATGCAGAATGTTGCATCTGCCTTTCTGCTTATGATGATGGAGTTGAACTGAGGGAACTTCCTTGTGGCCACCATTTTCACTGTACATGCGTAGACAAATGGCTACACATTAATGCTACTTGTCCGCTCTGCAAATATAACATTCTGAAGTTTAACAGCCACGGACAAGACGAAGTTTGA | 1122 | 48.13 | MASSEGLVDSTPFLANHRRSSSETNSSSRFVQRQSLRQAARFLGQASSRRTLRESSMRVRETAAEQLEERQSDWAYSKPIVILDIVWNFAFVAVAAIILVLSRTESPNVPLRLWLAGYGFQCVLHIVCVCYEYRRRRQRLQIHMVNSVGDGNRTPGGSSSGSRQNLSLGQLNEEDPSVAKHLESANTMFSFVWWIVGFYWVSAGSQGLAHASPLLYWLCLIFLGFDVFFVVFCVALACVIGIAVCCCLPCIIALLYAVADQEGASREDIDQLSKFKFRKCDDSGELTRDVQESSGGIMTECDTDSPIEHVLSQQDAECCICLSAYDDGVELRELPCGHHFHCTCVDKWLHINATCPLCKYNILKFNSHGQDEV | 373 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 5286865 | 5288634 | - | Bda024984.2 | Bda08g00529 | 11385 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda08g00529 | 373 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 298 | 367 | IPR013083 | - | |
| Bda08g00529 | 373 | SUPERFAMILY | RING/U-box | 309 | 364 | - | - | |
| Bda08g00529 | 373 | SMART | ring_2 | 318 | 358 | IPR001841 | - | |
| Bda08g00529 | 373 | CDD | RING-H2_RNF111_like | 317 | 361 | - | - | |
| Bda08g00529 | 373 | Pfam | Ring finger domain | 317 | 359 | IPR001841 | - | |
| Bda08g00529 | 373 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
| Bda08g00529 | 373 | ProSiteProfiles | Zinc finger RING-type profile. | 318 | 359 | IPR001841 | - | |
| Bda08g00529 | 373 | PANTHER | TARGET OF ERK KINASE MPK-1 | 2 | 373 | - | - | |
| Bda08g00529 | 373 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 2 | 373 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda08g00529 | Bda-Chr8:5286865 | Bda13g01283 | Bda-Chr13:35146003 | 1.02E-45 | dispersed | |
| Bda07g01752 | Bda-Chr7:32975913 | Bda08g00529 | Bda-Chr8:5286865 | 7.65E-106 | transposed | |
| Bda10g01198 | Bda-Chr10:45980959 | Bda08g00529 | Bda-Chr8:5286865 | 1.26E-106 | transposed | |
| Bda11g00732 | Bda-Chr11:7373670 | Bda08g00529 | Bda-Chr8:5286865 | 6.62E-77 | transposed | |
| Bda13g00332 | Bda-Chr13:4176181 | Bda08g00529 | Bda-Chr8:5286865 | 7.78E-147 | transposed | |
| Bda06g00077 | Bda-Chr6:781162 | Bda08g00529 | Bda-Chr8:5286865 | 4.03E-171 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda08g00529 | - | - | csv:101209228 | 544.273 |