Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda08g00530 | ATGGCGTCTTCTTCTTCAGGCACCGGAAGCAGCTATGATACGCCGTGGGTGGAGAAGTACAGGCCAAACAAGGTCGCAGACATTGTTGGAAATGAAGACGCTGTTTCAAGGCTCCAAGTCATTGCTCGCGATGGGAACATGCCAAACCTCATCTTAGCCGGGCCTCCTGGAACTGGTAAAACAACTAGCATACTTGCTCTTGCGCACGAGCTGTTAGGACTAAATTACAAGGAGGCTGTGTTGGAGCTAAATGCATCTGATGACAGGGGAATAGATGTTGTGAGGAACAAAATTAAAATGTTTGCCCAGAAAAAAGTAACTCTGGCCCCGGGCAAGCATAAAATAGTAATCTTGGATGAAGCTGATAGCATGACATCTGGAGCACAACAAGCTTTGAGGAGGACTATGGAAATATATTCAAACACTACCCGCTTTGCTCTTGCATGCAATACATCTGCAAAAATAATTGAGCCTATTCAGAGTAGATGCGCGATTGTCAGATATTCAAGATTATCTGATCAAGAGATACTTGGTCGTCTGATGGTGGTTATTCAAGCTGAAAGGGTTCCCTATGTGCCAGAGGGCCTTGAGGCAATCATCTTTACAGCTGATGGAGATATGAGACAGGCATTGAACAACTTACAAGCTACACACAGTGGATTTCGATTTGTTAACCAAGACAATGTGTTCAAGGTCTGTGATCAGCCTCATCCGTTGCATGTGAGGAACATGGTACGCAACGTGATTGAAGGAAAATTTGACGAAGCTTGTTCAGGTCTGAAGCAACTATACGACTTGGGTTATTCGCCCACTGACATTATCACAACCCTTTTCCGCATCATTAAAAACTATGACATGGCTGAGTTTCTGAAATTGGAATTTATGAAGGAAACTGGATTTGCCCATATGAGAATTTGTGATGGAGTTGGTTCATATCTTCAGTTATGTGGTCTTTTGGCCAAACTTTCTATTGCACGTGTAACAGCCAAAGCTGAATGA | 999 | 43.44 | MASSSSGTGSSYDTPWVEKYRPNKVADIVGNEDAVSRLQVIARDGNMPNLILAGPPGTGKTTSILALAHELLGLNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLAPGKHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSAKIIEPIQSRCAIVRYSRLSDQEILGRLMVVIQAERVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHVRNMVRNVIEGKFDEACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEFLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSIARVTAKAE | 332 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 5300999 | 5302853 | + | Bda024985.1 | Bda08g00530 | 11386 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda08g00530 | 332 | Pfam | Replication factor C C-terminal domain | 236 | 321 | IPR013748 | - | |
| Bda08g00530 | 332 | PANTHER | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT | 8 | 329 | - | - | |
| Bda08g00530 | 332 | Pfam | ATPase family associated with various cellular activities (AAA) | 50 | 168 | IPR003959 | GO:0005524|GO:0016887 | |
| Bda08g00530 | 332 | Gene3D | - | 236 | 327 | - | - | |
| Bda08g00530 | 332 | PANTHER | REPLICATION FACTOR C SUBUNIT 2 | 8 | 329 | - | - | |
| Bda08g00530 | 332 | Gene3D | - | 172 | 235 | - | - | |
| Bda08g00530 | 332 | SMART | AAA_5 | 46 | 172 | IPR003593 | - | |
| Bda08g00530 | 332 | Gene3D | - | 8 | 171 | IPR027417 | - | |
| Bda08g00530 | 332 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 235 | 325 | IPR008921 | GO:0003677|GO:0006260 | |
| Bda08g00530 | 332 | CDD | HLD_clamp_RFC | 171 | 233 | - | - | |
| Bda08g00530 | 332 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 12 | 234 | IPR027417 | - | |
| Bda08g00530 | 332 | CDD | AAA | 29 | 166 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda03g00016 | Bda-Chr3:377462 | Bda08g00530 | Bda-Chr8:5300999 | 4.28E-61 | dispersed | |
| Bda04g01061 | Bda-Chr4:61619530 | Bda08g00530 | Bda-Chr8:5300999 | 1.10E-07 | dispersed | |
| Bda08g00530 | Bda-Chr8:5300999 | Bda13g01478 | Bda-Chr13:37675193 | 1.05E-69 | dispersed | |
| Bda09g01383 | Bda-Chr9:45695693 | Bda08g00530 | Bda-Chr8:5300999 | 4.49E-10 | transposed | |
| Bda11g00296 | Bda-Chr11:3354230 | Bda08g00530 | Bda-Chr8:5300999 | 3.27E-15 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda08g00530 | K10755 | - | csv:101208984 | 610.142 |