Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda08g00532 | ACTTCACTTTTCTTGGCGATCATGGCGTCGAGTTCTTCAAAAAAACACTCTCTTTACAGAGGAATTCGTTGCAGAAGCGGAAAATGGGTGACGGAAATTCGGGAGCCACGAAAGTCGAACAGAATTTGGCTCGGAACCTTCCCCTCGCCTGAAATGGCAGCAGCAGCCCACGACGTCGCAGCTCTAGCACTCAGAGGAAACAAAGCCACTCTTAACTTTCCGGCGCTTGTGGGTTCTTATCCAGTTCCTGTTTCTACCTCCCCGGCCGATATAAGAGCAGCTGCTTCAGCCGCCGCAACTCTGATGAATATGAGCTTTAAAGACAATGGTGGTGGGACGGAGCAGTTCTGTAATTTTATCGAAAATTTTGTTGACGAGGAGGAGATTTTCGACATGCCGAATTTGCTGGTGGATATGGCGGGAGGAATGTTAATGTCACCGCCCAGAATGAACTCGCCGCCGGAACATGACGGGGTTGGGTTTTCCGATGGAGGAGAGCATTTGTGGAGCCATTTTTGA | 519 | 49.71 | TSLFLAIMASSSSKKHSLYRGIRCRSGKWVTEIREPRKSNRIWLGTFPSPEMAAAAHDVAALALRGNKATLNFPALVGSYPVPVSTSPADIRAAASAAATLMNMSFKDNGGGTEQFCNFIENFVDEEEIFDMPNLLVDMAGGMLMSPPRMNSPPEHDGVGFSDGGEHLWSHF | 172 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 5326882 | 5327400 | + | Bda024988.1 | Bda08g00532 | 11388 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda08g00532 | 172 | CDD | AP2 | 17 | 76 | IPR001471 | GO:0003700|GO:0006355 | |
Bda08g00532 | 172 | SMART | rav1_2 | 18 | 80 | IPR001471 | GO:0003700|GO:0006355 | |
Bda08g00532 | 172 | Pfam | AP2 domain | 18 | 66 | IPR001471 | GO:0003700|GO:0006355 | |
Bda08g00532 | 172 | Gene3D | AP2/ERF domain | 18 | 76 | IPR036955 | GO:0003700|GO:0006355 | |
Bda08g00532 | 172 | ProSiteProfiles | AP2/ERF domain profile. | 18 | 74 | IPR001471 | GO:0003700|GO:0006355 | |
Bda08g00532 | 172 | PRINTS | Ethylene responsive element binding protein signature | 19 | 30 | IPR001471 | GO:0003700|GO:0006355 | |
Bda08g00532 | 172 | PRINTS | Ethylene responsive element binding protein signature | 56 | 76 | IPR001471 | GO:0003700|GO:0006355 | |
Bda08g00532 | 172 | SUPERFAMILY | DNA-binding domain | 17 | 75 | IPR016177 | GO:0003677 | |
Bda08g00532 | 172 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 8 | 172 | - | - | |
Bda08g00532 | 172 | PANTHER | ETHYLENE RESPONSE FACTOR | 8 | 172 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda08g00532 | Bda-Chr8:5326882 | Bda15g00741 | Bda-Chr15:10894917 | 2.00E-41 | dispersed | |
Bda06g00071 | Bda-Chr6:732342 | Bda08g00532 | Bda-Chr8:5326882 | 1.86E-86 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16269 | PF00847 | AP2 | 1.80E-10 | CL0081 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda08g00532 | - | - | jre:109011571 | 199.904 |