Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00532 ACTTCACTTTTCTTGGCGATCATGGCGTCGAGTTCTTCAAAAAAACACTCTCTTTACAGAGGAATTCGTTGCAGAAGCGGAAAATGGGTGACGGAAATTCGGGAGCCACGAAAGTCGAACAGAATTTGGCTCGGAACCTTCCCCTCGCCTGAAATGGCAGCAGCAGCCCACGACGTCGCAGCTCTAGCACTCAGAGGAAACAAAGCCACTCTTAACTTTCCGGCGCTTGTGGGTTCTTATCCAGTTCCTGTTTCTACCTCCCCGGCCGATATAAGAGCAGCTGCTTCAGCCGCCGCAACTCTGATGAATATGAGCTTTAAAGACAATGGTGGTGGGACGGAGCAGTTCTGTAATTTTATCGAAAATTTTGTTGACGAGGAGGAGATTTTCGACATGCCGAATTTGCTGGTGGATATGGCGGGAGGAATGTTAATGTCACCGCCCAGAATGAACTCGCCGCCGGAACATGACGGGGTTGGGTTTTCCGATGGAGGAGAGCATTTGTGGAGCCATTTTTGA 519 49.71 TSLFLAIMASSSSKKHSLYRGIRCRSGKWVTEIREPRKSNRIWLGTFPSPEMAAAAHDVAALALRGNKATLNFPALVGSYPVPVSTSPADIRAAASAAATLMNMSFKDNGGGTEQFCNFIENFVDEEEIFDMPNLLVDMAGGMLMSPPRMNSPPEHDGVGFSDGGEHLWSHF 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5326882 5327400 + Bda024988.1 Bda08g00532 11388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00532 172 CDD AP2 17 76 IPR001471 GO:0003700|GO:0006355
Bda08g00532 172 SMART rav1_2 18 80 IPR001471 GO:0003700|GO:0006355
Bda08g00532 172 Pfam AP2 domain 18 66 IPR001471 GO:0003700|GO:0006355
Bda08g00532 172 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
Bda08g00532 172 ProSiteProfiles AP2/ERF domain profile. 18 74 IPR001471 GO:0003700|GO:0006355
Bda08g00532 172 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Bda08g00532 172 PRINTS Ethylene responsive element binding protein signature 56 76 IPR001471 GO:0003700|GO:0006355
Bda08g00532 172 SUPERFAMILY DNA-binding domain 17 75 IPR016177 GO:0003677
Bda08g00532 172 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 8 172 - -
Bda08g00532 172 PANTHER ETHYLENE RESPONSE FACTOR 8 172 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00532 Bda-Chr8:5326882 Bda15g00741 Bda-Chr15:10894917 2.00E-41 dispersed
Bda06g00071 Bda-Chr6:732342 Bda08g00532 Bda-Chr8:5326882 1.86E-86 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16269 PF00847 AP2 1.80E-10 CL0081 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00532 - - jre:109011571 199.904