Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bda08g00533	ATGGATTTTTCCTGCTCCGGGTCACTAGGAAATCTGGCTGTAAAACCGGAGAATTCTTTACTGACACCCCGATATTCTCATTCTGATGAAGAGGTGATACTGGCGACGAACCGGCCGAAGAAGCGAGCAGGTCGGATAGTGTTTAAAGAGACCAGACACCCTGTTTACAGAGGAGTCCGGAGAAGAAACTCCGGAAAGTGGGTTTGCGAGGTGCGAGAACCGAAGAAAAAGACTCGCATATGGCTCGGAACTTATCCGACAGCTGAAATGGCGGCTCGTGCTCACGACGTTGCCGCTCTCGCTCTGAGAGGCAGGACTGCGTGTCTCAATTTCGCCGACTCGGCTTGGCGGTTTAAGGTTCCAGCGTCGACAGACTCGAAGGAAATAAGAATAGCGGCGGCTCGGGCGGCGGAGGCGTTTGGGAGAGAAGGAAATGCAGAGAAAGAGGGGGAGAAGAGGAAGACGAACGAGGAAGAGGAGGCTGTGTTTTATATGGACGAAGAAGAGGAGGATATTTTCGGAATTCCGAGGATATCTGACGTGGCAGACCTTCCTTTACATTCTCCCCCACATCTCAGCCCCAGTGATGACGTAAAGTGGGATGAGTTGGATGTTGATACTGACGTGTCATTATGGAGTTTTTCTATTTGA	651	51.0	MDFSCSGSLGNLAVKPENSLLTPRYSHSDEEVILATNRPKKRAGRIVFKETRHPVYRGVRRRNSGKWVCEVREPKKKTRIWLGTYPTAEMAARAHDVAALALRGRTACLNFADSAWRFKVPASTDSKEIRIAAARAAEAFGREGNAEKEGEKRKTNEEEEAVFYMDEEEEDIFGIPRISDVADLPLHSPPHLSPSDDVKWDELDVDTDVSLWSFSI	216

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
8	5329583	5330233	+	Bda024989.1	Bda08g00533	11389

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bda08g00533	216	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1F	21	216	-	-
	Bda08g00533	216	CDD	AP2	56	114	IPR001471	GO:0003700\|GO:0006355
	Bda08g00533	216	ProSiteProfiles	AP2/ERF domain profile.	55	112	IPR001471	GO:0003700\|GO:0006355
	Bda08g00533	216	SUPERFAMILY	DNA-binding domain	55	114	IPR016177	GO:0003677
	Bda08g00533	216	PRINTS	Ethylene responsive element binding protein signature	56	67	IPR001471	GO:0003700\|GO:0006355
	Bda08g00533	216	PRINTS	Ethylene responsive element binding protein signature	78	94	IPR001471	GO:0003700\|GO:0006355
	Bda08g00533	216	SMART	rav1_2	55	118	IPR001471	GO:0003700\|GO:0006355
	Bda08g00533	216	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D	21	216	IPR045277	GO:0003700
	Bda08g00533	216	Pfam	AP2 domain	54	104	IPR001471	GO:0003700\|GO:0006355
	Bda08g00533	216	Gene3D	AP2/ERF domain	55	113	IPR036955	GO:0003700\|GO:0006355

Event-related genes

Select	Gene_1	Gene_2	Event_name
	Bda07g00496	Bda08g00533	CCT

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Bda08g00533	Bda-Chr8:5329583	Bda15g00742	Bda-Chr15:10900169	3.86E-72	dispersed
	Bda06g00088	Bda-Chr6:946874	Bda08g00533	Bda-Chr8:5329583	4.40E-20	transposed
	Bda07g00496	Bda-Chr7:6224391	Bda08g00533	Bda-Chr8:5329583	3.54E-60	wgd

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	16270	PF00847	AP2	1.00E-15	CL0081	Bda	TF

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bda08g00533	-		-	zju:107434878	228.024