Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00545 ATGGAGAGGTTCGTCTCCTTCTCCGTCGTCCTGATTTCGGTCATCGCAGCAAAATCAGCCATCGCGGGTCCTGTCTTTAAGCCAAGCCCATGGAAACTCGCTCATGCCACTTTTTACGGGGACGAAACGGCCTCCGAAACCATGGGAGGGGCGTGTGGGTACGGAAACTTGTTCGTGAATGGGTACGGAACAGACACAGCTGCGCTCAGCTCAACACTGTTCAATAACGGATACGCATGCGGGACGTGTTACCAAATAAAATGCTTTCAAGCAAAGGCATGCTACGCAAAAGTTGCATACACTACTGTCACAGCCACCAACCTTTGTCCTCCTAACTGGTCACAAGACTCCAATGCTGGTGGTTGGTGCAATCCGCCAAGAGTTCACTTCGACATGTCCAAGCCCGCCTTCATGAAAATTGCATACTGGAAAGCAGGCATTGTCCCCGTCCTCTACCGGAGGGTACCGTGCGCGAGGAAGGGCGGATTGAGACTCAGCTTTCAAGGAAACGGATATTGGCTGCTCGTGTACATAATGAATGTCGGAGGAGGAGGAGATTTAGTGACAATGCAAGTGAAAGGAAGCAAGACAGGGTGGATAAGCATGAGTCACAACTGGGGAGCTTCATACCAAGCATTTGCTACATTGGGTGGCCAATCTCTATCCTTTAGGCTCACTTCCTACACTTCTAGAGAGACTATTTATGCTTGGAATGTTGCTCCTTCTAATTGGCGAGTTGGATTGACCTATCAATCTTATGTTAACTTCCATTGA 774 49.22 MERFVSFSVVLISVIAAKSAIAGPVFKPSPWKLAHATFYGDETASETMGGACGYGNLFVNGYGTDTAALSSTLFNNGYACGTCYQIKCFQAKACYAKVAYTTVTATNLCPPNWSQDSNAGGWCNPPRVHFDMSKPAFMKIAYWKAGIVPVLYRRVPCARKGGLRLSFQGNGYWLLVYIMNVGGGGDLVTMQVKGSKTGWISMSHNWGASYQAFATLGGQSLSFRLTSYTSRETIYAWNVAPSNWRVGLTYQSYVNFH 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5510248 5511509 - Bda025000.1 Bda08g00545 11401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00545 257 Pfam Expansin C-terminal domain 166 241 IPR007117 -
Bda08g00545 257 Gene3D - 162 257 IPR036749 -
Bda08g00545 257 PRINTS Expansin signature 137 150 IPR002963 GO:0009664
Bda08g00545 257 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Bda08g00545 257 PRINTS Expansin signature 120 137 IPR002963 GO:0009664
Bda08g00545 257 PRINTS Expansin signature 61 75 IPR002963 GO:0009664
Bda08g00545 257 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Bda08g00545 257 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Bda08g00545 257 PRINTS Expansin signature 238 254 IPR002963 GO:0009664
Bda08g00545 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 252 IPR007117 -
Bda08g00545 257 Pfam Lytic transglycolase 66 152 IPR009009 -
Bda08g00545 257 SUPERFAMILY PHL pollen allergen 159 252 IPR036749 -
Bda08g00545 257 PANTHER EXPANSIN-A15 8 257 IPR002963 GO:0009664
Bda08g00545 257 PANTHER EXPANSIN-A7 8 257 - -
Bda08g00545 257 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Bda08g00545 257 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Bda08g00545 257 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Bda08g00545 257 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Bda08g00545 257 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Bda08g00545 257 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Bda08g00545 257 SUPERFAMILY Barwin-like endoglucanases 30 180 IPR036908 -
Bda08g00545 257 Gene3D - 16 158 IPR036908 -
Bda08g00545 257 SMART dpbb_1 66 152 IPR007112 -
Bda08g00545 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 162 IPR007112 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda06g00062 Bda08g00545 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00545 Bda-Chr8:5510248 Bda15g00354 Bda-Chr15:6419088 5.26E-92 dispersed
Bda06g00062 Bda-Chr6:645092 Bda08g00545 Bda-Chr8:5510248 1.36E-167 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00545 - - tcc:18606420 438.728