Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00547 TCTAGAGAGAGAAAAAGAGGAGAGAGTATGTCGATCTCAGTGGCTTCAAGAGTAGAAAGCTTAGCAAGCAGCGGGATTCTTTCAATCCCAAAAGAATACGTGAGGCCGCAAGAAGAACTCACCAGCATTGGAGATGTGTTCGAAGAAGAAAGAAAAAAGGAAGGACCTCAATTACCCACAATAGATTTAAACGACATCGAATCAGAGGACCAGACTGTGAGAGAAAGATGTCACGAGGAGCTCAAAAAGGCAGCAATGGATTGGGGAGTGATGCATCTGGTCAACCATGGAATTTCAGACGAGTTGACTGCTCGAGTGAAAGAGGCTGGAAGAGTGTTCTTCGATCAGCCGATTGAGGAGAAAGAGAAGTACGCAAATGACCAGGCTTCTGGTAAGATTCAGGGGTATGGGAGTAAGTTGGCTAATAATGCTAGTGGCCAGCTTGAGTGGGAAGATTACTTTTTCCACCTTGTTTATCCTGAGGAGAAACGGGATTTGTCCATTTGGCCAAAGCATCCTGCTGAATATACAGAGGTGACAACTGAGTATGCAAGGCAACTGAGGATCTTAGCTACAAAAATCTTCAAAGTCCTGTCAATTGGGTTAGGATTAGAAGAAGACAGGCTAGAAAAAGAAGTAGGAGGGCTAGAGGAGCTTCTTTTACAAATGAAAATCAACTACTACCCGAAATGCCCTCAACCAGAGCTAGCCCTAGGAGTAGAAGCTCACACCGACGTGAGTGCTCTGACCTTCATCCTCCATAACATGGTTCCTGGCCTGCAACTCTTCTACAACGACAGCTGGGTGACTGCAAAATGTGTGCCGAATTCCATAATCATGCACATCGGAGACACCGTTGAAATACTGAGCAATGGAAAATACAAAAGTATTCTTCACAGAGGACTGGTTAACAAAGAGAAAGTGAGGATTTCTTGGGCTGTTTTCTGCGAGCCACCTAAGGAGAAGATCATTCTTAAGCCGTTGCCGGAGGTTGTGTCGGAGGCGGAGCCAGCAATCTTCCCGCCGAGGACCTTTGCTCAGCACATTCATCACAAACTGTTCAGGAAGAGTCAGGAGGGTTTTGGTTCTAAGTGA 1095 45.75 SRERKRGESMSISVASRVESLASSGILSIPKEYVRPQEELTSIGDVFEEERKKEGPQLPTIDLNDIESEDQTVRERCHEELKKAAMDWGVMHLVNHGISDELTARVKEAGRVFFDQPIEEKEKYANDQASGKIQGYGSKLANNASGQLEWEDYFFHLVYPEEKRDLSIWPKHPAEYTEVTTEYARQLRILATKIFKVLSIGLGLEEDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYNDSWVTAKCVPNSIIMHIGDTVEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKEKIILKPLPEVVSEAEPAIFPPRTFAQHIHHKLFRKSQEGFGSK 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5522298 5523686 + Bda025002.1 Bda08g00547 11403

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00547 364 Gene3D - 13 361 IPR027443 -
Bda08g00547 364 Pfam 2OG-Fe(II) oxygenase superfamily 222 318 IPR044861 -
Bda08g00547 364 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 219 318 IPR005123 -
Bda08g00547 364 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 17 360 - -
Bda08g00547 364 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 17 360 - -
Bda08g00547 364 Pfam non-haem dioxygenase in morphine synthesis N-terminal 58 171 IPR026992 -
Bda08g00547 364 SUPERFAMILY Clavaminate synthase-like 16 356 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00547 K05277 ANS; anthocyanidin synthase [EC:1.14.20.4] - tcc:18606417 606.675
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00547 Bda-Chr8:5522298 Bda13g01448 Bda-Chr13:37192294 5.45E-102 dispersed
Bda08g00547 Bda-Chr8:5522298 Bda08g00537 Bda-Chr8:5388294 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g429 Blo02g01083 . . Bda08g00547 . . . . . Cmo16g00543 . . . . . . . . . . . . . . . . . . . . . Cone8ag0343 . . Cone9ag0737 . . . . . . . . . . . . . . . . Cma16g00499 . Car16g01149 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015062 2 0 4 2 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 13
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00547 Bda_Chr08 FPKM 17.383919 17.253565 23.078257 22.311567 23.521835 26.243593 23.243586 35.705597 34.450111