Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00564 ATGTCGTCTTCTTCTTCGACTATTCCTCCCTTTTCTCCAGCTCTGGACCACCTCCCCCTCTCCGAGCAGCTATGTTACGTCCACTGCAAAATCTGTGATACCATTCTTGCGGTGAGTGTTCCTTGCAGTAGTTTCTTCAAGACCGTGACAGTCCGATGCGGCCACTGCACTAACCTTCTGCCGTTGAACATGCGAGCCCAGCTCTTTCCTTCGACCAATCCTCAATTTCATCAGCTGAATCGCCCTTTCTTCTCTCCTTCTCTCAATCTCCTGGAAGAGACCCAGAATCCATCTCCCAACTTTCTGATCAGCCCAACAAGCGCAAATCATTACACCACTCCACCTCGACTAACTGACGAGCTTCCGAGAGCTCCAGTTATCAACAGACCTCCAGAGAAGAGACAAAGAGTTCCCTCTGCATATAACAGGTTCATCAAGGACGAGATTCAACGCATCAAGTCTGTGAATCCCGATATATCACACAGAGAAGCTTTCAGTGCAGCAGCTAAGAATTGGGCCCACTTTCCCCATATTCATTTTGGTCTCATACCTGATCAAACTCTGAAGACGAAGACAATCACCCGTCAGGAAGGAGAAGACCAAATTCTGATGAAAGATGGGTTTTTAGCTTCAGCAAATGTGGGTTTCTCCCCTTTCTAA 660 47.58 MSSSSSTIPPFSPALDHLPLSEQLCYVHCKICDTILAVSVPCSSFFKTVTVRCGHCTNLLPLNMRAQLFPSTNPQFHQLNRPFFSPSLNLLEETQNPSPNFLISPTSANHYTTPPRLTDELPRAPVINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLIPDQTLKTKTITRQEGEDQILMKDGFLASANVGFSPF 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5726069 5727995 + Bda029023.1 Bda08g00564 11420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00564 219 Pfam YABBY protein 21 182 IPR006780 GO:0007275
Bda08g00564 219 MobiDBLite consensus disorder prediction 105 130 - -
Bda08g00564 219 Gene3D High mobility group box domain 126 177 IPR036910 -
Bda08g00564 219 SUPERFAMILY HMG-box 127 175 IPR036910 -
Bda08g00564 219 PANTHER PROTEIN YABBY 6-RELATED 1 216 IPR006780 GO:0007275
Bda08g00564 219 PANTHER AXIAL REGULATOR YABBY 3 1 216 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda07g00010 Bda08g00564 CCT
Bda06g00039 Bda08g00564 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00672 Bda-Chr2:47697065 Bda08g00564 Bda-Chr8:5726069 5.49E-58 dispersed
Bda08g00564 Bda-Chr8:5726069 Bda09g01385 Bda-Chr9:45711455 2.34E-49 dispersed
Bda07g00010 Bda-Chr7:155652 Bda08g00564 Bda-Chr8:5726069 5.15E-109 transposed
Bda08g00059 Bda-Chr8:474375 Bda08g00564 Bda-Chr8:5726069 7.24E-58 transposed
Bda06g00039 Bda-Chr6:403357 Bda08g00564 Bda-Chr8:5726069 6.35E-123 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16274 PF04690 YABBY 9.30E-69 CL0114 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00564 K25796 - qsu:112020341 319.701