Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda08g00564 | ATGTCGTCTTCTTCTTCGACTATTCCTCCCTTTTCTCCAGCTCTGGACCACCTCCCCCTCTCCGAGCAGCTATGTTACGTCCACTGCAAAATCTGTGATACCATTCTTGCGGTGAGTGTTCCTTGCAGTAGTTTCTTCAAGACCGTGACAGTCCGATGCGGCCACTGCACTAACCTTCTGCCGTTGAACATGCGAGCCCAGCTCTTTCCTTCGACCAATCCTCAATTTCATCAGCTGAATCGCCCTTTCTTCTCTCCTTCTCTCAATCTCCTGGAAGAGACCCAGAATCCATCTCCCAACTTTCTGATCAGCCCAACAAGCGCAAATCATTACACCACTCCACCTCGACTAACTGACGAGCTTCCGAGAGCTCCAGTTATCAACAGACCTCCAGAGAAGAGACAAAGAGTTCCCTCTGCATATAACAGGTTCATCAAGGACGAGATTCAACGCATCAAGTCTGTGAATCCCGATATATCACACAGAGAAGCTTTCAGTGCAGCAGCTAAGAATTGGGCCCACTTTCCCCATATTCATTTTGGTCTCATACCTGATCAAACTCTGAAGACGAAGACAATCACCCGTCAGGAAGGAGAAGACCAAATTCTGATGAAAGATGGGTTTTTAGCTTCAGCAAATGTGGGTTTCTCCCCTTTCTAA | 660 | 47.58 | MSSSSSTIPPFSPALDHLPLSEQLCYVHCKICDTILAVSVPCSSFFKTVTVRCGHCTNLLPLNMRAQLFPSTNPQFHQLNRPFFSPSLNLLEETQNPSPNFLISPTSANHYTTPPRLTDELPRAPVINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLIPDQTLKTKTITRQEGEDQILMKDGFLASANVGFSPF | 219 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 5726069 | 5727995 | + | Bda029023.1 | Bda08g00564 | 11420 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda08g00564 | 219 | Pfam | YABBY protein | 21 | 182 | IPR006780 | GO:0007275 | |
Bda08g00564 | 219 | MobiDBLite | consensus disorder prediction | 105 | 130 | - | - | |
Bda08g00564 | 219 | Gene3D | High mobility group box domain | 126 | 177 | IPR036910 | - | |
Bda08g00564 | 219 | SUPERFAMILY | HMG-box | 127 | 175 | IPR036910 | - | |
Bda08g00564 | 219 | PANTHER | PROTEIN YABBY 6-RELATED | 1 | 216 | IPR006780 | GO:0007275 | |
Bda08g00564 | 219 | PANTHER | AXIAL REGULATOR YABBY 3 | 1 | 216 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bda07g00010 | Bda08g00564 | CCT | |
Bda06g00039 | Bda08g00564 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda02g00672 | Bda-Chr2:47697065 | Bda08g00564 | Bda-Chr8:5726069 | 5.49E-58 | dispersed | |
Bda08g00564 | Bda-Chr8:5726069 | Bda09g01385 | Bda-Chr9:45711455 | 2.34E-49 | dispersed | |
Bda07g00010 | Bda-Chr7:155652 | Bda08g00564 | Bda-Chr8:5726069 | 5.15E-109 | transposed | |
Bda08g00059 | Bda-Chr8:474375 | Bda08g00564 | Bda-Chr8:5726069 | 7.24E-58 | transposed | |
Bda06g00039 | Bda-Chr6:403357 | Bda08g00564 | Bda-Chr8:5726069 | 6.35E-123 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16274 | PF04690 | YABBY | 9.30E-69 | CL0114 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda08g00564 | K25796 | - | qsu:112020341 | 319.701 |