Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00566 ATGGGTATGAAGTATAATTCTATTCCTCGATGGCTAGAAGCACTTTTGGGAGAGAGATTCTTCAGTTCTTGTTTAGCTCATCAGTCTCTTAAGAAGAACGAAAAGAACATCTTTTGCTTGCACTGTCGCGCCAGCTTCTGCCCTCACTGCGTATCTCTTCACCCTCGTCATCGTCTTCTGCAGATAAGAAGATACGTTTATCATGATGTTTTGAGGCGGTCTGATGCTCAGAAGTTGATGAATTGCTCCTTAGTTCAACCATACACAACAAACAGTGAGAAAGTGGTTTTTCTCAAGGAAAGGCCAACATCAAAGCAATTTAGAGGTTCGGGAAAATTCTGCAGCAACTGCGACAGAAGCCTCCAACCGCCATTTATCTTCTGTTCCCTCTCCTGCAAGGTCCATCATCTGACTACCACCGAAGCCGGAATCCAAAATCACCTCCATGGCCGTGATTATTCTCCGTCTTCAAGCAGAAATAATGGCGTCGAGAACTTATCTGACTCGGAGCTTTACTCGACGGGTTCTCCGTCCCCATCAGTGAGTTCAGATCCGAGTGGCGGTGCAACCATGCCAATGAGAGTAAATTCCAGAGCTTCAAGCTTGTTCGACGTAACTGAGCTAACTAAGAAGAAGCGTATCTGTGTGAACTCGGCGACTCGGGCTTTGAGTAAACAGAGATGTTCACCGGAATATGGAACAGCCTCCGCCATTAACCGGCGGAAGGGTATTCCTCAGAGATCACCCTTATCCTAA 756 46.43 MGMKYNSIPRWLEALLGERFFSSCLAHQSLKKNEKNIFCLHCRASFCPHCVSLHPRHRLLQIRRYVYHDVLRRSDAQKLMNCSLVQPYTTNSEKVVFLKERPTSKQFRGSGKFCSNCDRSLQPPFIFCSLSCKVHHLTTTEAGIQNHLHGRDYSPSSSRNNGVENLSDSELYSTGSPSPSVSSDPSGGATMPMRVNSRASSLFDVTELTKKKRICVNSATRALSKQRCSPEYGTASAINRRKGIPQRSPLS 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5757688 5758642 + Bda029026.1 Bda08g00566 11422

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00566 251 PANTHER BNAA09G38660D PROTEIN 6 250 - -
Bda08g00566 251 ProSiteProfiles Zinc finger B-box type profile. 24 62 IPR000315 GO:0008270
Bda08g00566 251 MobiDBLite consensus disorder prediction 147 193 - -
Bda08g00566 251 MobiDBLite consensus disorder prediction 226 251 - -
Bda08g00566 251 Pfam PLATZ transcription factor 63 134 IPR006734 -
Bda08g00566 251 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 6 250 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00566 - - - vvi:100852507 251.521
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda08g00566 Bda09g00093 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00566 Bda-Chr8:5757688 Bda09g00084 Bda-Chr9:1616490 1.09E-67 dispersed
Bda02g00014 Bda-Chr2:914530 Bda08g00566 Bda-Chr8:5757688 1.81E-56 transposed
Bda08g00057 Bda-Chr8:466507 Bda08g00566 Bda-Chr8:5757688 3.43E-67 transposed
Bda09g00855 Bda-Chr9:20553375 Bda08g00566 Bda-Chr8:5757688 9.09E-62 transposed
Bda11g00332 Bda-Chr11:3678146 Bda08g00566 Bda-Chr8:5757688 3.84E-34 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g503 Blo02g01052 . . Bda08g00566 Bpe05g00591 Bpe07g00162 . . . . . Cma15g01144 . . . . . Bhi11g00028 Tan01g2199 . . . Mch10g1668 . . . . . . . . . . Cone6ag0693 Cone9ag0695 . Csa05g00400 Chy09g01113 . . Blo19g00232 . Bda09g00093 Bpe08g01436 . Bma05g00773 Bma12g00153 . . . . . . Car16g01102 . . Bhi12g00413 . . Lac11g2257 Hepe06g1656 . Lcy12g1803 Cla01g00373 Cam01g0392 Cec01g0384 Cco01g0404 Clacu01g0392 Cmu01g0373 Cre09g2138 Lsi09g00404 . . Cme09g01643
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006180 3 1 2 4 3 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16275 PF04640 PLATZ 1.80E-24 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00566 Bda_Chr08 FPKM 1.020334 0.868541 0.0 0.0 0.0 0.0 0.0 0.0 0.0