Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00575 ATGGCTTCCCAATTCGCCCTTAGAAGGATCACTTCGTCGTGCCTACGCCCAAAGGTTGTGGGTCCTTCTCGCTCTGCCTCTGTTTTTCGATCCTTCAATACCAACGCTGCTCAAGTCACCGATTACGATGAAAGCGACCGAGCTGTTGACGTCGATTGCCGGAATGACCGCTCCGTCTCCCGTCGCCTCGACAGGTTCCCTGGCTTCGCAGATGTTTTCGATCCTTTTTCTCCGCCGAGGAGTTTGAGCCAAGTGCTGAATCTGATGGACCAATTCATGGAGGATCCATTTGTAGCGGCATCGAGAGGCGCCGGAGCAGGATCGAGAAGAAGGTGGAACGTGAAGGAAGACGAACAGGCCTTGTATCTGCGGATGGACATGCCTGGTCTGGGAAAAGAGAACGTCAAGGTTTCGGTAGAAAATAACACTCTGATAATCAAAGGAGAAGGAGAGGATAAACCGGAGGAGGGGGAGAGTGGAAGAAGGTACTCCAGCCGGCTGGACTTACCACCGGACGTGTACAAGCTGGACTCCATAAAAGCAGAGATGAAGAATGGAGTGCTTAAAGTTACAGTGACAAAAGCGAAGGAGGAAGAGAGGAAGAATGTGATGGAAGTGAAAATTGAGTAA 630 50.95 MASQFALRRITSSCLRPKVVGPSRSASVFRSFNTNAAQVTDYDESDRAVDVDCRNDRSVSRRLDRFPGFADVFDPFSPPRSLSQVLNLMDQFMEDPFVAASRGAGAGSRRRWNVKEDEQALYLRMDMPGLGKENVKVSVENNTLIIKGEGEDKPEEGESGRRYSSRLDLPPDVYKLDSIKAEMKNGVLKVTVTKAKEEERKNVMEVKIE 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5864803 5865502 - Bda029037.1 Bda08g00575 11431

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00575 209 Pfam Hsp20/alpha crystallin family 114 208 IPR002068 -
Bda08g00575 209 Gene3D - 69 208 IPR008978 -
Bda08g00575 209 MobiDBLite consensus disorder prediction 146 168 - -
Bda08g00575 209 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 103 209 IPR002068 -
Bda08g00575 209 CDD ACD_sHsps-like 113 194 - -
Bda08g00575 209 MobiDBLite consensus disorder prediction 146 165 - -
Bda08g00575 209 PANTHER HEAT SHOCK 22 KDA PROTEIN, MITOCHONDRIAL-LIKE 1 209 - -
Bda08g00575 209 SUPERFAMILY HSP20-like chaperones 81 201 IPR008978 -
Bda08g00575 209 PANTHER 23.5 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 1 209 IPR044656 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00575 K13993 HSP20; HSP20 family protein - csv:101219106 262.692
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00575 Bda-Chr8:5864803 Bda10g00958 Bda-Chr10:43885758 5.61E-21 dispersed
Bda08g00575 Bda-Chr8:5864803 Bda14g00159 Bda-Chr14:1099370 3.78E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g533 . . . Bda08g00575 . . . . Cmo06g00800 Cmo16g01193 . . . . Sed04g1717 . . Bhi11g00196 Tan01g2027 Cmetu06g0652 . . . . . . . . . . . . . . . Lsi07g01303 . . Cme06g02574 . . . . . . . . . . . Cma06g00780 . Car06g00694 . Cpe08g00743 . . . . . . . . . . . . . . . . Csa03g00277 Chy06g02045 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002899 1 4 2 2 1 2 3 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 1 1 1 1 1 2 1 3 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00575 Bda_Chr08 FPKM 18.121412 18.078079 7.736352 8.034755 22.660353 24.113285 19.66761 3.53027 4.545182