Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00598 GGGATGTTTGAACAGAGTGGTTCCGATTTGGTGCTTCTTGACTCGATTCGCCGGTATTTGTTGGGCGAATCGGACTCTCTGCGAGACGGTAAAGTGATTGTCTCCGGTTCCGGCCCTGTTTTCTGTAGGAGCTCCAGTTTCAGTAGCTTGTATCCTTGCCTGACGGAGAATTGGGGGGAATTGCCGCTTAAAGTGGATGATTCGGAGGATATGGTCCTCGCCGGAGTGCTCCATGAAGCCGTTAATGTCGGTTGGGTACCCTCACTTACTTCGCCGTCTCCGGAAATCGGAAAATTTGGGGTGTCTTATGTGAAATCGGAACCAGAGATCTTTCCTCCACTGAACCAGTCACCGGAGCTGGAGAAGGTACAGCCTGTGCGGGCAGTGGTTCCTCCTAGAGGAAAGCATTACCGGGGCGTTCGGCAGCGGCCGTGGGGGAAATTCGCGGCGGAAATTCGGGACCCGGCAAAGAATGGGGCTAGAGTTTGGCTCGGAACCTTTGAGACGGCCGAGGACGCGGCTTTAGCTTACGACCGCGCAGCGTATCGGATGCGCGGCTCAAAAGCTTTACTCAACTTTCCTCTCCGGGTTAACTCCGGTGAACCCGACCCGATTAGAGTCACTTCCAAGCGATCTTCGCCGGAGCCATCATCGCCCGGGGATAGCAGTGCGTCGCCAAAAAGGCGGAAGAAGGCGAACATCTCGTCGGATTCGCCGATATCGCCTCCTCAAGAGGGGCAAATAAGTAAAACATCTATGGAGGAGCAAATACATGCGGTAAACAATATAAAGGCTTGCACACATGGCGAAGAACTATTGGCTGTCTAG 828 53.86 GMFEQSGSDLVLLDSIRRYLLGESDSLRDGKVIVSGSGPVFCRSSSFSSLYPCLTENWGELPLKVDDSEDMVLAGVLHEAVNVGWVPSLTSPSPEIGKFGVSYVKSEPEIFPPLNQSPELEKVQPVRAVVPPRGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSKALLNFPLRVNSGEPDPIRVTSKRSSPEPSSPGDSSASPKRRKKANISSDSPISPPQEGQISKTSMEEQIHAVNNIKACTHGEELLAV 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6108808 6109635 + Bda029063.1 Bda08g00598 11454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00598 275 PRINTS Ethylene responsive element binding protein signature 137 148 IPR001471 GO:0003700|GO:0006355
Bda08g00598 275 PRINTS Ethylene responsive element binding protein signature 160 176 IPR001471 GO:0003700|GO:0006355
Bda08g00598 275 PANTHER DNA-BINDING DOMAIN 32 231 IPR044808 GO:0003700|GO:0009873
Bda08g00598 275 Gene3D AP2/ERF domain 135 197 IPR036955 GO:0003700|GO:0006355
Bda08g00598 275 MobiDBLite consensus disorder prediction 199 253 - -
Bda08g00598 275 SUPERFAMILY DNA-binding domain 136 196 IPR016177 GO:0003677
Bda08g00598 275 Pfam AP2 domain 136 186 IPR001471 GO:0003700|GO:0006355
Bda08g00598 275 CDD AP2 135 194 IPR001471 GO:0003700|GO:0006355
Bda08g00598 275 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1-RELATED 32 231 - -
Bda08g00598 275 MobiDBLite consensus disorder prediction 235 253 - -
Bda08g00598 275 ProSiteProfiles AP2/ERF domain profile. 136 194 IPR001471 GO:0003700|GO:0006355
Bda08g00598 275 SMART rav1_2 136 200 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01040 Bda-Chr3:9986747 Bda08g00598 Bda-Chr8:6108808 4.61E-35 dispersed
Bda06g00011 Bda-Chr6:97555 Bda08g00598 Bda-Chr8:6108808 7.49E-160 dispersed
Bda07g01782 Bda-Chr7:33680448 Bda08g00598 Bda-Chr8:6108808 1.17E-55 dispersed
Bda08g00068 Bda-Chr8:592161 Bda08g00598 Bda-Chr8:6108808 8.14E-36 dispersed
Bda08g00598 Bda-Chr8:6108808 Bda09g00741 Bda-Chr9:12928612 5.47E-91 dispersed
Bda08g00597 Bda-Chr8:6097599 Bda08g00598 Bda-Chr8:6108808 1.30E-29 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16280 PF00847 AP2 1.10E-14 CL0081 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00598 K09286 - csv:101203663 312.768