Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda08g00598 | GGGATGTTTGAACAGAGTGGTTCCGATTTGGTGCTTCTTGACTCGATTCGCCGGTATTTGTTGGGCGAATCGGACTCTCTGCGAGACGGTAAAGTGATTGTCTCCGGTTCCGGCCCTGTTTTCTGTAGGAGCTCCAGTTTCAGTAGCTTGTATCCTTGCCTGACGGAGAATTGGGGGGAATTGCCGCTTAAAGTGGATGATTCGGAGGATATGGTCCTCGCCGGAGTGCTCCATGAAGCCGTTAATGTCGGTTGGGTACCCTCACTTACTTCGCCGTCTCCGGAAATCGGAAAATTTGGGGTGTCTTATGTGAAATCGGAACCAGAGATCTTTCCTCCACTGAACCAGTCACCGGAGCTGGAGAAGGTACAGCCTGTGCGGGCAGTGGTTCCTCCTAGAGGAAAGCATTACCGGGGCGTTCGGCAGCGGCCGTGGGGGAAATTCGCGGCGGAAATTCGGGACCCGGCAAAGAATGGGGCTAGAGTTTGGCTCGGAACCTTTGAGACGGCCGAGGACGCGGCTTTAGCTTACGACCGCGCAGCGTATCGGATGCGCGGCTCAAAAGCTTTACTCAACTTTCCTCTCCGGGTTAACTCCGGTGAACCCGACCCGATTAGAGTCACTTCCAAGCGATCTTCGCCGGAGCCATCATCGCCCGGGGATAGCAGTGCGTCGCCAAAAAGGCGGAAGAAGGCGAACATCTCGTCGGATTCGCCGATATCGCCTCCTCAAGAGGGGCAAATAAGTAAAACATCTATGGAGGAGCAAATACATGCGGTAAACAATATAAAGGCTTGCACACATGGCGAAGAACTATTGGCTGTCTAG | 828 | 53.86 | GMFEQSGSDLVLLDSIRRYLLGESDSLRDGKVIVSGSGPVFCRSSSFSSLYPCLTENWGELPLKVDDSEDMVLAGVLHEAVNVGWVPSLTSPSPEIGKFGVSYVKSEPEIFPPLNQSPELEKVQPVRAVVPPRGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSKALLNFPLRVNSGEPDPIRVTSKRSSPEPSSPGDSSASPKRRKKANISSDSPISPPQEGQISKTSMEEQIHAVNNIKACTHGEELLAV | 275 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 6108808 | 6109635 | + | Bda029063.1 | Bda08g00598 | 11454 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda08g00598 | 275 | PRINTS | Ethylene responsive element binding protein signature | 137 | 148 | IPR001471 | GO:0003700|GO:0006355 | |
Bda08g00598 | 275 | PRINTS | Ethylene responsive element binding protein signature | 160 | 176 | IPR001471 | GO:0003700|GO:0006355 | |
Bda08g00598 | 275 | PANTHER | DNA-BINDING DOMAIN | 32 | 231 | IPR044808 | GO:0003700|GO:0009873 | |
Bda08g00598 | 275 | Gene3D | AP2/ERF domain | 135 | 197 | IPR036955 | GO:0003700|GO:0006355 | |
Bda08g00598 | 275 | MobiDBLite | consensus disorder prediction | 199 | 253 | - | - | |
Bda08g00598 | 275 | SUPERFAMILY | DNA-binding domain | 136 | 196 | IPR016177 | GO:0003677 | |
Bda08g00598 | 275 | Pfam | AP2 domain | 136 | 186 | IPR001471 | GO:0003700|GO:0006355 | |
Bda08g00598 | 275 | CDD | AP2 | 135 | 194 | IPR001471 | GO:0003700|GO:0006355 | |
Bda08g00598 | 275 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1-RELATED | 32 | 231 | - | - | |
Bda08g00598 | 275 | MobiDBLite | consensus disorder prediction | 235 | 253 | - | - | |
Bda08g00598 | 275 | ProSiteProfiles | AP2/ERF domain profile. | 136 | 194 | IPR001471 | GO:0003700|GO:0006355 | |
Bda08g00598 | 275 | SMART | rav1_2 | 136 | 200 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda03g01040 | Bda-Chr3:9986747 | Bda08g00598 | Bda-Chr8:6108808 | 4.61E-35 | dispersed | |
Bda06g00011 | Bda-Chr6:97555 | Bda08g00598 | Bda-Chr8:6108808 | 7.49E-160 | dispersed | |
Bda07g01782 | Bda-Chr7:33680448 | Bda08g00598 | Bda-Chr8:6108808 | 1.17E-55 | dispersed | |
Bda08g00068 | Bda-Chr8:592161 | Bda08g00598 | Bda-Chr8:6108808 | 8.14E-36 | dispersed | |
Bda08g00598 | Bda-Chr8:6108808 | Bda09g00741 | Bda-Chr9:12928612 | 5.47E-91 | dispersed | |
Bda08g00597 | Bda-Chr8:6097599 | Bda08g00598 | Bda-Chr8:6108808 | 1.30E-29 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16280 | PF00847 | AP2 | 1.10E-14 | CL0081 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda08g00598 | K09286 | - | csv:101203663 | 312.768 |