Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00611 ATGGAGGTCTTGTTGACTCCAACACATTTAGCCATAGTTATGGAATATGCAGCCGGAGGTGAACTCTTTGCAAGAATTTGCAGTGCAGGCCGATTTAGCGAAGATGAGGCAAGATTTTTCTTCCAGCAGCTAATATCAGGGGTCAGCTACTGCCACTACATGGAAATTTGCCATCGAGATTTGAAACTCGAGAACACTCTCTTGGACGGAAGCCCTACGCCTCGGCTTAAAATATGCGATTTTGGTTACTCAAAGTCTGCTCTGTTACATTCGCAACCGAAATCTACAGTTGGAACACCAGCATACATTGCACCAGAAGTTTTGTCCCGGAAGGAATACAACGGGAAAATTGCAGATGTTTGGTCTTGTGGTGTAACGTTGTATGTTATGTTGGTTGGAGCATACCCTTTTGAAGATCCCGATGACCCAAGAAACTTTCGAAAAACCATCGAGAGGATCCTAAGCGTTCAGTATTCCATACCGGATTATGTGCGCATGTCGACCGATTGTCGTCATCTTCTTTCAAATATATTCGTCTCTAATCCGACCAAGAGAATTACCATACCAGAAATAAAGAAGCATCCTTGGTTTCTCAAGAGCTTATCAAAAGAACTCATCGAAATCGAGAACACAAACTACGAAAAAGTCGATCGTGAGTACTCGAGTCAGAGCGTTGAAGAAATCATGCAAATCATACAAGAAGCAAGATCACCTGAGAAAGGGTCCAAAAGCGGGGACAAGGACGTTGATGGAGCATCAGGGTCGGACAATCTGAACGGCGATATCGAATCAGACTTCGACGTGAGTGGCGATTACGAGACGTGGGATTGA 831 44.28 MEVLLTPTHLAIVMEYAAGGELFARICSAGRFSEDEARFFFQQLISGVSYCHYMEICHRDLKLENTLLDGSPTPRLKICDFGYSKSALLHSQPKSTVGTPAYIAPEVLSRKEYNGKIADVWSCGVTLYVMLVGAYPFEDPDDPRNFRKTIERILSVQYSIPDYVRMSTDCRHLLSNIFVSNPTKRITIPEIKKHPWFLKSLSKELIEIENTNYEKVDREYSSQSVEEIMQIIQEARSPEKGSKSGDKDVDGASGSDNLNGDIESDFDVSGDYETWD 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6234716 6236427 - Bda029073.1 Bda08g00611 11467

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00611 276 PANTHER SERINE/THREONINE KINASE 2 265 - -
Bda08g00611 276 SUPERFAMILY Protein kinase-like (PK-like) 2 216 IPR011009 -
Bda08g00611 276 Gene3D Transferase(Phosphotransferase) domain 1 1 251 - -
Bda08g00611 276 ProSitePatterns Serine/Threonine protein kinases active-site signature. 56 68 IPR008271 GO:0004672|GO:0006468
Bda08g00611 276 SMART serkin_6 1 197 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda08g00611 276 ProSiteProfiles Protein kinase domain profile. 1 197 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda08g00611 276 PANTHER SERINE/THREONINE-PROTEIN KINASE SAPK1 2 265 - -
Bda08g00611 276 MobiDBLite consensus disorder prediction 232 276 - -
Bda08g00611 276 Pfam Protein kinase domain 2 197 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00611 K14498 SNRK2; serine/threonine-protein kinase SRK2 [EC:2.7.11.1] - pvy:116133083 461.455
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00611 Bda-Chr8:6234716 Bda14g01227 Bda-Chr14:12401936 2.65E-135 dispersed
Bda08g00611 Bda-Chr8:6234716 Bda13g01394 Bda-Chr13:36624073 6.84E-142 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g558 Blo02g01010 . . Bda08g00611 Bpe05g00545 . . . Cmo06g00845 Cmo16g01150 . . . . . Cpe14g00910 . Bhi11g00087 . . . . Mch10g1603 . Cla10g00206 Cam10g0212 Cec10g0217 Cco10g0218 Clacu10g0215 Cmu10g1058 Cre10g0466 . . . . Lsi07g01247 . . Cme06g02518 . . . . . . Bma05g00737 . . . . Cma06g00823 Cma16g01101 . Car16g01042 . . Bhi05g00574 Tan07g1902 . Lac11g2344 Hepe06g1246 . . . . . . . . . . Csa03g00222 Chy06g02099 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000065 7 16 8 7 7 11 10 10 11 8 11 11 10 12 10 9 11 14 10 10 9 6 8 6 7 11 4 12 10 7 283
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69766 PF00069 Pkinase 2.40E-53 CL0016 Bda PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00611 Bda_Chr08 FPKM 18.04315 19.306643 12.182637 14.107041 17.837835 18.819136 16.849699 20.363695 20.16931