Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00617 ACGGGAATGAAGGAAATACAGATAGCTCACCAGAAGCTTACCATCCACGAACTTGACGACGTCTGCGACCCAGCGACCGGCAGGGCTATCACAGGCTCATGGCTATGGAACTCAGCTCTTGTGTTAGCCGAGTGGCTAGCAACTCAGAGCCAACTCCACCACTTTGACTTCCATTCCAAATCGGTTATCGAGCTCGGCTCAGGAACCGGCCTCCCCGGCCTAACGGCTGCTTTGCTTGATGCCAGCCGGGTTGTACTCACCGATGTTGAGCTTCTGCTTCCAGGCTTATTAAGAAATGTTGAAGCCAATGGACTCGGGGACAGAGTGGAGGTGAGGGAACTCATTTGGAAATCGAAAGACTCGGCGAGTGAAACCGAGAGATTGGATAAGTTCGATGTGGTTTTGATGTCGGACGTTTTCTTCGACCAGGATGAAATGGGTCCTTTAGCAGACACGATAAACAGGCTATGCCGAACAGATACCAAAATCTGGGGAGCGGCGGAGGTGCGGCCGTGGACAGGCGAGTGCCTGAACGAGTTTACAAGTCGAGGCTTTGAGGTGGTTGAGTTAGCCATTCGACTAGGTTTTACCAATTCTTCCATGGGAGGTGAATCAGAGGTTTTCACCATTTTCAATCTCACACCACCGCACGAAGAAAACCAGGCGATGGATAATTGA 678 51.18 TGMKEIQIAHQKLTIHELDDVCDPATGRAITGSWLWNSALVLAEWLATQSQLHHFDFHSKSVIELGSGTGLPGLTAALLDASRVVLTDVELLLPGLLRNVEANGLGDRVEVRELIWKSKDSASETERLDKFDVVLMSDVFFDQDEMGPLADTINRLCRTDTKIWGAAEVRPWTGECLNEFTSRGFEVVELAIRLGFTNSSMGGESEVFTIFNLTPPHEENQAMDN 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6320752 6321429 + Bda029079.1 Bda08g00617 11473

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00617 225 Pfam Lysine methyltransferase 31 170 IPR019410 -
Bda08g00617 225 CDD AdoMet_MTases 62 145 - -
Bda08g00617 225 PANTHER HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN 3 216 IPR019410 -
Bda08g00617 225 Gene3D Vaccinia Virus protein VP39 12 202 IPR029063 -
Bda08g00617 225 PANTHER OSJNBA0070O11.4 PROTEIN 3 216 - -
Bda08g00617 225 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 36 190 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00617 - - K21804 qlo:115970710 264.233
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00617 Bda-Chr8:6320752 Bda13g00608 Bda-Chr13:7078288 3.03E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g598 Blo02g01004 . . Bda08g00617 Bpe05g00539 . . . . Cmo16g01138 . . . . . Cpe14g00899 . . . . . . . . Cla10g00191 Cam10g0197 Cec10g0203 Cco10g0204 Clacu10g0201 Cmu10g1045 Cre10g0451 . . . Cone9ag0624 . . . Cme06g02504 . . . . . . Bma05g00396 . . . . . Cma16g01088 . Car16g01030 . . . . . . . . . . . . . . . . . . Chy06g02111 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013523 1 0 2 1 1 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 0 1 0 1 1 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00617 Bda_Chr08 FPKM 24.345465 26.629227 272.721191 281.070374 50.263653 51.58976 46.072842 64.152756 68.044502