Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00618 ATGTCTCCACCTCGTAAACATAGAGCTAGAAATGATACACCTTCTCCTGAACCAAGGGTGACGCATTTAGATTCAAGAAGGGAAGGAGAGGATTTGTCACCCCCTCGGCAGAAGTGCCATCACAGTCCAGCACCTGACACTAGAGGAGAGGATTTTTCTCCGCCTCGCAAACAAAAGTTTCCTAGCCCTCCAGCTTCCTTGAAAGAGCAGCCAAAGACTGGTTTGATATCTGGTCGAGATATCAGGGAAGAGATTGCTAAAACTAAGAAAGATGAGTGGTTAAGGTTCAAAGAGATGGATCCGTCTATAAGCGGTGTGGGAGCTGAACCTATTTATAGGGACAAGATTAAAGGGGAACGCATTTCAAAGGAGAACTTCTTGAAATCGCGACAGATAGTAGAAGAAAAACCCAAGGAGGTAACACTGGAATGGGGCAAGGGTCTAAAAAAACATCATGATCCAGTTCTGCCAAATCTAGGGGAAAGTGAGAAGATGCAGGAATCCGGGTTTATCATTCCACAGGAAACTCCTGCTCATAGCTGGCTGAAAAGAGGATTTGATGCTGCACCTAATCGATATGGCATAAGACCGGGAAGACATTGGGATGGAGTCGATCGAAGCAATGGATTTGAGAAGGAAATGTTCAAAAGGATGAACACCAAACAAGCTTCAGAGAGAGAAGCTTATCTTTGGTCTGTCTCTGACATGTGA 711 44.87 MSPPRKHRARNDTPSPEPRVTHLDSRREGEDLSPPRQKCHHSPAPDTRGEDFSPPRKQKFPSPPASLKEQPKTGLISGRDIREEIAKTKKDEWLRFKEMDPSISGVGAEPIYRDKIKGERISKENFLKSRQIVEEKPKEVTLEWGKGLKKHHDPVLPNLGESEKMQESGFIIPQETPAHSWLKRGFDAAPNRYGIRPGRHWDGVDRSNGFEKEMFKRMNTKQASEREAYLWSVSDM 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6344512 6346788 - Bda029084.1 Bda08g00618 11474

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00618 236 MobiDBLite consensus disorder prediction 1 81 - -
Bda08g00618 236 Pfam Pre-mRNA-splicing factor of RES complex 151 219 IPR018609 -
Bda08g00618 236 PANTHER BUD13 HOMOLOG 150 236 - -
Bda08g00618 236 PANTHER BUD13 HOMOLOG 2 152 - -
Bda08g00618 236 MobiDBLite consensus disorder prediction 1 55 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00618 K13106 BUD13, CWC26; pre-mRNA-splicing factor CWC26 - tcc:18600346 310.457
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g632 Blo02g01002 . . Bda08g00618 Bpe05g00538 . . . Cmo06g00861 . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0618 Cone9ag0620 . . . . . . . . . . . . . . . Cma06g00839 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004758 1 4 2 1 1 1 2 1 1 2 1 1 3 1 1 2 1 2 1 1 1 1 1 1 1 1 1 3 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00618 Bda_Chr08 FPKM 42.352318 47.983177 56.235138 56.166092 38.386986 45.230507 40.075775 24.866087 27.102291