Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00666 ATGGCAGAGGCTAATCACAGTAATATTTCTCCAGCAGCAGTGAGTGGTGACATTGAAAAATGTACACGTCCCTCTCCAAGTTCTTTTGGCCCAAGTCATCTGCACAATGAACCTGCAAAGCAGCATTACACAGAAACATCAAATTTTGTTGATGAAGTTTCGCAATTTTCTGATGATATAGCAGAGAATTTTGCAGCTGAAAAATTAGAATTGTCTTATGAGATTCTCATTAGAAATCATGGATGCAAGAATAGTTCATACCTCAATCAAATTACTACAGAACAAACACATGAATCTGTTCATACAAGTGTGCTGACTGAATCAACAGAACAAAAACATGAATCAATTAAAAGGGCCGTGCCAATATCTAATGTTGATGGGGATCAATCTTTAGTATGTTCTAATAATGTGAATCAAGATTACTTGGCACAAGCTTTGGAGCTTCCTCTTGATGTGAAAGGAAACAGTCAGATTGATGATAAGAGACTTGGTGATGATGAGGGTTGCTCTACAGGGACAACGAGGAAACTGTTGAACAATCTATCAGAGTTGAATTATCATGACATTGAATCAGTAAAAAATCTGACACAAAAAACTAGCCCTGAAGAACATACAGAAGTCCAACAGACAATATTGCAACAGACACAAGTAGAGGTCTTTGAAGAACTTTTAAGTAAACTGTCAGAGAAAAATCATCTCAGTGATTCTGAATTTGCTCAAAATAATCCAGCTGGGCTTGATGTTATTCAAGAATTTGAGCCTAATTTTGCTGATTGTTCTCTTGATGATGTTCTTAAACTTCCTTTTGTAGATGCATCAGATTCAGATAATCAGTTAAAATCATTTGTTCAAGATAGCATTAACGAGTTAAAAACACCAATTAAAAGATCAGCCAAATATTCCAAACAAGTTAATTGTCAAGCTTCAAAATCTAGACGGAAAAAATATATATTGAGATCACTGGGTCACACTGACAGGGTATTGCGCTCAAGAACACAAGGGAATGCCACAGCTTCTAAACCAAGTAATCCTGTCAGTAGTGTTAGATGTGAAGGAGATGGAAAAGGTAGGAAGAAGAAAAGAAGAAAGAAGACTAAAGTGGCAGACGAGTTTTCAAAAATTAGAAATTGCCTGAGATATTTCCTTAATCGAATGGCATATGAACAAAGCTTCATTGCTGCTTATTCTGGTGAAGGTTGGAAAGGATACAGCTTAGAGAAGTTAAAGCCAGAGAAGGAGCTTCAACGGGCCACAAGTGAAATAATGCGACGCAAATTGAAAATAAGAGATCTTTTTAAACACCTTGATTCGCTTTGTGTTAATGGAAGGTTTCCAGAGTCTCTGTTTGATTCTGAAGGACAAATTGACAGTGAGGATATATTCTGTGCGATATGTGGATCTAAAGAAATGTCTGCTAATAATGACATTATACTCTGTGATGGTGCTTGTGATCGTGGTTTTCACCAGCTCTGTTTAGACCCACCATTGCTGAACGAAGATATTCCCCAAGATGATGATGGTTGGCTATGCCCTGGTTGTGATTGCAAAGTTGACTGCATTGATTTGCTTAATGACGCTCAAGGAACCAATTATTCTCTCACTGACAGTTGGGAGAATATTTATCCTGAGGCTGCTGCTGTAGCTGCTGGACAAAGTCATGATCTGACCTTGGGTCTCCCTTCAGATGATTCGGATGATAATGATTTTGATCCACATGATCCAGAAACTGATGAGCAGGGAGATGAATCAAGTCCTGTTGTATCTGATAATAATATTGAAACTGAAAAATTGGTCGCTTTGCCTAAAAACAACCAATATCTGGGACTTCCTTCTGATGATTCGGACGATGATGATTATAATCCCGGCGCTCCAGATACTGAAGAGAAGATTAAGTCAGAAAGTTCAAGTTCTGATTTTACTTCTGATTCTGAGAATCTGGCAGCCATTTTTGAAGATGATAGGCCTTCTAGGAATGAAGATGATTCTGTCTCTTCATCTGGCAATAGTACCAGTTCTCATATAGGCATTGACAAAAAAAGCTGCAGACGTGGTCTAGGAAAGCATTTATTGAATGATGAGCTTTCTTCTCTACTAAACTTGGAACCTCTTAATGATGGACTTTCACCTATTACCAGCAGACGGCATGTGGAACGATTGGACTATAAGAAGCTACATAATGAGACATATGGAAGTATTTCTTCTGACTCAAGTGATGATGATGATTGGAATGATATTGCTGCTCCGAGAAAGAAAAGTTGTCAAATAGTCTCTCCGGCTGAACAAATTGGAAATTCTTCAGTGATAAAGAAGGGACGTAAAGTTATGGGTAAGAATTATGTAAAGGGGAGGGAGATCACTTCAAAAAGGAGTGCTCATCGTAGACAGACAGTTGACGCGACAAATGATTCTTCGATAAAAGTACAAGAAGGATCTTCCAAGTCTTGTTCAACTGGTAGAAGAGCCAAATCATCTGCTTACAGTAAACTTGGGGAAGCTGTAATTCAGAGACTTCGTTTATCATTTGAAGAAAATCAGTACCCTGAAAAACATACAAAAGAAAGTTTGGCTCAAGATCTAGGACTCAGTTTCAAGCAGGTCAATCCTTACTTTCTCCAACTTTTTATGCACAATTTTTTTGAGGCAGTTTTAGCAGCTTCATTGTTTTGCAGGTCAACAAATGGTTTGAAAATACTCGTTGGAGTACTCGTCATCCGACAAATGCAAAAGCAAATGGAAACACAAGCGAAGATAAATCTGAAAGCCCTCCGAACAAAGTCACTCCAGTGTCTCGCTCAACCAGAGAACTTAAGCCAGAATTGGATCCCAGTCTTGGAGATGCCACTCACAACAGTGCTCATCTCATAA 2865 38.39 MAEANHSNISPAAVSGDIEKCTRPSPSSFGPSHLHNEPAKQHYTETSNFVDEVSQFSDDIAENFAAEKLELSYEILIRNHGCKNSSYLNQITTEQTHESVHTSVLTESTEQKHESIKRAVPISNVDGDQSLVCSNNVNQDYLAQALELPLDVKGNSQIDDKRLGDDEGCSTGTTRKLLNNLSELNYHDIESVKNLTQKTSPEEHTEVQQTILQQTQVEVFEELLSKLSEKNHLSDSEFAQNNPAGLDVIQEFEPNFADCSLDDVLKLPFVDASDSDNQLKSFVQDSINELKTPIKRSAKYSKQVNCQASKSRRKKYILRSLGHTDRVLRSRTQGNATASKPSNPVSSVRCEGDGKGRKKKRRKKTKVADEFSKIRNCLRYFLNRMAYEQSFIAAYSGEGWKGYSLEKLKPEKELQRATSEIMRRKLKIRDLFKHLDSLCVNGRFPESLFDSEGQIDSEDIFCAICGSKEMSANNDIILCDGACDRGFHQLCLDPPLLNEDIPQDDDGWLCPGCDCKVDCIDLLNDAQGTNYSLTDSWENIYPEAAAVAAGQSHDLTLGLPSDDSDDNDFDPHDPETDEQGDESSPVVSDNNIETEKLVALPKNNQYLGLPSDDSDDDDYNPGAPDTEEKIKSESSSSDFTSDSENLAAIFEDDRPSRNEDDSVSSSGNSTSSHIGIDKKSCRRGLGKHLLNDELSSLLNLEPLNDGLSPITSRRHVERLDYKKLHNETYGSISSDSSDDDDWNDIAAPRKKSCQIVSPAEQIGNSSVIKKGRKVMGKNYVKGREITSKRSAHRRQTVDATNDSSIKVQEGSSKSCSTGRRAKSSAYSKLGEAVIQRLRLSFEENQYPEKHTKESLAQDLGLSFKQVNPYFLQLFMHNFFEAVLAASLFCRSTNGLKILVGVLVIRQMQKQMETQAKINLKALRTKSLQCLAQPENLSQNWIPVLEMPLTTVLIS 954
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6956748 6966293 - Bda029128.1 Bda08g00666 11522

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00666 954 MobiDBLite consensus disorder prediction 328 346 - -
Bda08g00666 954 ProSiteProfiles 'Homeobox' domain profile. 820 870 IPR001356 GO:0003677
Bda08g00666 954 CDD PHD_PRHA_like 461 513 IPR045876 -
Bda08g00666 954 MobiDBLite consensus disorder prediction 661 675 - -
Bda08g00666 954 MobiDBLite consensus disorder prediction 1 38 - -
Bda08g00666 954 Gene3D - 790 872 - -
Bda08g00666 954 ProSiteProfiles Zinc finger PHD-type profile. 459 516 IPR019787 -
Bda08g00666 954 ProSitePatterns Zinc finger PHD-type signature. 462 513 IPR019786 -
Bda08g00666 954 SUPERFAMILY FYVE/PHD zinc finger 451 519 IPR011011 -
Bda08g00666 954 MobiDBLite consensus disorder prediction 554 677 - -
Bda08g00666 954 MobiDBLite consensus disorder prediction 328 365 - -
Bda08g00666 954 CDD homeodomain 834 867 IPR001356 GO:0003677
Bda08g00666 954 SMART PHD_3 461 514 IPR001965 -
Bda08g00666 954 MobiDBLite consensus disorder prediction 797 820 - -
Bda08g00666 954 MobiDBLite consensus disorder prediction 561 582 - -
Bda08g00666 954 MobiDBLite consensus disorder prediction 782 820 - -
Bda08g00666 954 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 455 518 IPR013083 -
Bda08g00666 954 Pfam PHD-finger 461 516 IPR019787 -
Bda08g00666 954 PANTHER HOMEOBOX PROTEIN HAT3.1 219 870 - -
Bda08g00666 954 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 219 870 - -
Bda08g00666 954 SUPERFAMILY Homeodomain-like 822 871 IPR009057 -
Bda08g00666 954 MobiDBLite consensus disorder prediction 782 796 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00666 - - - qlo:115967836 587.03
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g01216 Bda08g00666 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01900 Bda-Chr1:55153904 Bda08g00666 Bda-Chr8:6956748 1.76E-47 transposed
Bda06g01216 Bda-Chr6:42099996 Bda08g00666 Bda-Chr8:6956748 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g656 Blo02g00944 Blo03g00085 Bda06g01216 Bda08g00666 Bpe07g00262 . Bma05g00672 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1009 Cone10ag1026 . . . . . . . . . Bpe05g00488 . . . Cmo04g00496 Cmo16g00355 . . . . Cpe14g00278 Cpe01g00416 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003741 2 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16288 PF00628 PHD 1.10E-11 CL0390 Bda TF