Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00735 ATGTCATTCCGTAGCCTAGTCCGAGATGTAAGGGATAGTATTGGGAGCTTATCCAGACGTGGATTTGAGGTCCGGCTGACTGGCCATAACCGAGAAAAATCATATGGTTCTTGCCATGATTCGCACGATCAGCCTCTCGTGGTTCAGAGCAGCTGCTGGGCCAACCTTCCACCGGAGCTGCTCTATGATGTGATCAGGAGGCTGGAGGAGAGCGAAAGCACTTGGCCTTCGCGTAAGCATGTCATTGCTTGTGCTGCAGTTTGCCGTTCTTGGAGAAACATGTGCAAAGAATTAGTTAAAAATCCTGAAATTTGTGGGAAGCTTACATTTCCTGTGTCTCTAAAGCAGCCAGGGCCACGTGACGGAACCATCCAGTGCTTCATTAAAAGGGATAAGTCGAATTTAACGTACCACCTCTATCTCTGTCTTAGCCCTGCTTTGCTGGTTGAAAATGGGAAATTCCTTCTTTCTGCAAAACGAACACGAAGAACGACTAGCACTGAGTACGTTATCTCAATGGATGCTGAGAACATCTCGAGATCAAGCAGCACCTATATCGGAAAACTAAGGTCAAATTTTCTCGGTACAAAGTTCATCATATACGACACTCAACCTCCATACACGTGTGCTACCATTCCTTCGCTCGGTAAAACAAGTCAAAGATTCTACTCGAAAAAGGTCTCCCCGAAAGTTCCAAGCGGAAGCTACAACATTGCCCAAATAAGCTACGAACTAAACGTGTTGGGCACTCGAGGCCCGCGAAGAATGCATTGTGTGATGCATTCGATCCCATTTTCGTCCCTCGATGTAGGCGGATTCGTCCCTGGACGGCCGGAGCTCCTCCCCCGCACGCTCGAAGACTCATTCCGGAGCATCTCCTTCTCCAAGTCTCTCGATTATTCCATGGAGTTCAGCAGCTCTAGATTCTCTGAAATCGGCAGACGTGTCGACGGCGATGAGGAGGAAAAGACAGTTATACCCTTGGTGCTGAAAAACAAGCCGCCAAGATGGCACGAGCAGTTGCAGTGCTGGTGCTTGAATTTCCGAGGGCGTGTGACGGTTGCTTCTGTGAAGAACTTTCAGTTGATTGCAGCGGCACAGCCGGTGGCCGGGGCTCTAGCGTCATCTCAGCCGACTCCTCCAGAGTACGATAAGATAATTCTTCAGTTCGGGAAGGTCGGTAAAGACATGTTTACGATGGATTACCGGTATCCCTTATCGGCCTTTGAGGCTTTCTCCATTTGCTTGAGCAGCTTCGACACGAAATTGGCTTGTGAATAG 1281 48.95 MSFRSLVRDVRDSIGSLSRRGFEVRLTGHNREKSYGSCHDSHDQPLVVQSSCWANLPPELLYDVIRRLEESESTWPSRKHVIACAAVCRSWRNMCKELVKNPEICGKLTFPVSLKQPGPRDGTIQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYVISMDAENISRSSSTYIGKLRSNFLGTKFIIYDTQPPYTCATIPSLGKTSQRFYSKKVSPKVPSGSYNIAQISYELNVLGTRGPRRMHCVMHSIPFSSLDVGGFVPGRPELLPRTLEDSFRSISFSKSLDYSMEFSSSRFSEIGRRVDGDEEEKTVIPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAAQPVAGALASSQPTPPEYDKIILQFGKVGKDMFTMDYRYPLSAFEAFSICLSSFDTKLACE 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8827647 8830322 + Bda029215.1 Bda08g00735 11591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00735 426 Pfam Tub family 114 421 IPR000007 -
Bda08g00735 426 Gene3D - 48 101 - -
Bda08g00735 426 PRINTS Tubby superfamily signature 330 347 IPR000007 -
Bda08g00735 426 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Bda08g00735 426 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Bda08g00735 426 PRINTS Tubby superfamily signature 404 426 IPR000007 -
Bda08g00735 426 PRINTS Tubby superfamily signature 383 402 IPR000007 -
Bda08g00735 426 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Bda08g00735 426 PRINTS Tubby superfamily signature 348 364 IPR000007 -
Bda08g00735 426 PANTHER TUBBY-RELATED 1 426 - -
Bda08g00735 426 Pfam F-box domain 53 100 IPR001810 GO:0005515
Bda08g00735 426 SUPERFAMILY Tubby C-terminal domain-like 102 426 IPR025659 -
Bda08g00735 426 ProSitePatterns Tub family signature 1. 348 361 IPR018066 -
Bda08g00735 426 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 426 - -
Bda08g00735 426 Gene3D Tubby Protein; Chain A 112 420 IPR025659 -
Bda08g00735 426 SUPERFAMILY F-box domain 49 97 IPR036047 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00525 Bda-Chr1:32229193 Bda08g00735 Bda-Chr8:8827647 3.22E-156 dispersed
Bda03g00391 Bda-Chr3:3234059 Bda08g00735 Bda-Chr8:8827647 0 dispersed
Bda05g00417 Bda-Chr5:49766357 Bda08g00735 Bda-Chr8:8827647 1.77E-43 dispersed
Bda08g00735 Bda-Chr8:8827647 Bda15g00463 Bda-Chr15:7706302 0 dispersed
Bda12g00817 Bda-Chr12:37582162 Bda08g00735 Bda-Chr8:8827647 2.18E-42 dispersed
Bda08g00735 Bda-Chr8:8827647 Bda08g00739 Bda-Chr8:8908663 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16291 PF01167 Tub 1.00E-114 CL0395 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00735 K19600 - jre:109007061 735.717