Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00739 ATGTCATTCCGTAGCCTAGTCCGAGATGTAAGGGATAGTATTGGGAGCTTATCCAGACGTGGATTTGAGGTCCGGCTGACTGGCCATAACCGAGAAAAATCATATGGTTCTTGCCATGATTTGCACGATCAGCTTCTCGTGGTTCAGAGCAGCTGCTGGGCCAACCTTCCACCGGAGCTGCTCTATGATGTGATCAGGAGGCTGGAGGAGAGCGAAAGCACTTGGCCTTCGCGTAAGCATGTCATTGCTTGTGCTGCAGTTTGCCGTTCTTGGAGAAACATGTGCAAAGAATTAGTTAAAAATCCTGAAATTTGTGGGAAGCTTACATTTCCTGTGTCTCTAAAGCAGCCAGGGCCACGTGACGGAACCATCCAGTGCTTCATTAAAAGGGATAAGTCGAATTTAACGTACCACCTCTATCTCTGTCTTAGCCCTGCTTTGCTGGTTGAAAATGGGAAATTCCTTCTTTCTGCAAAACGAACACGAAGAACGACTAGCACTGAGTACGTTATCTCAATGGATGCTGAGAACATCTCGAGATCAAGCAGCACCTATATCGGAAAACTAAGGTCAAATTTTCTTGGTACAAAGTTCATCATATACGACACTCAACCTCCATACACGTGTGCTGCCATTCCTTCGCTCGGTAAAACAAGTCAAAGATTCTACTCGAAAAAGGTCTCCCCGAAAGTTCCAAGCGGAAGCTACAACATTGCCCAAATAAGCTACGAACTAAACGTGTTGGGCACTCGAGGCCCGCGAAGAATGCATTGTGTGATGCATTCGATCCCATTTTCATCCCTCGATGTAGGCGGATTTGTCCCTGGACGGCAGGAGCTCCTCCCCCGCACGCTCGAAGACTCATTCCGGAGCATCTCCTTCTCCAAGTCTCTCGATTATTCCATGGAGTTCAGCAGCTCTAGATTCTCTGAAATCGGCAGACGTGTCGACGGCGATGAGGAGGAAAAGACAGTTATACCCTTGGTGCTGAAAAACAAGCCGCCAAGATGGCACGAGCAGTTGCAGTGCTGGTGCTTGAATTTCCGAGGGCGTGTGACGGTTGCTTCTGTGAAGAACTTTCAGTTGATTGCAGCGGCACAGCCGGTGGCTGGGGCTCTAGCGTCATCTCAGCCGACTCCTCCAGAGTACGATAAGATAATTCTTCAGTTCGGGAAGGTCGGTAAAGACATGTTTACGATGGATTACCGGTATCCCTTATCGGCCTTTGAGGCTTTCTCCATTTGCTTGAGCAGCTTCGACACGAAATTGGCTTGTGAATAG 1281 48.48 MSFRSLVRDVRDSIGSLSRRGFEVRLTGHNREKSYGSCHDLHDQLLVVQSSCWANLPPELLYDVIRRLEESESTWPSRKHVIACAAVCRSWRNMCKELVKNPEICGKLTFPVSLKQPGPRDGTIQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYVISMDAENISRSSSTYIGKLRSNFLGTKFIIYDTQPPYTCAAIPSLGKTSQRFYSKKVSPKVPSGSYNIAQISYELNVLGTRGPRRMHCVMHSIPFSSLDVGGFVPGRQELLPRTLEDSFRSISFSKSLDYSMEFSSSRFSEIGRRVDGDEEEKTVIPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAAQPVAGALASSQPTPPEYDKIILQFGKVGKDMFTMDYRYPLSAFEAFSICLSSFDTKLACE 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8908663 8911326 + Bda029219.1 Bda08g00739 11595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00739 426 Gene3D Tubby Protein; Chain A 112 420 IPR025659 -
Bda08g00739 426 Pfam Tub family 114 421 IPR000007 -
Bda08g00739 426 Gene3D - 48 101 - -
Bda08g00739 426 PRINTS Tubby superfamily signature 330 347 IPR000007 -
Bda08g00739 426 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Bda08g00739 426 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Bda08g00739 426 PRINTS Tubby superfamily signature 404 426 IPR000007 -
Bda08g00739 426 PRINTS Tubby superfamily signature 383 402 IPR000007 -
Bda08g00739 426 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Bda08g00739 426 PRINTS Tubby superfamily signature 348 364 IPR000007 -
Bda08g00739 426 PANTHER TUBBY-RELATED 1 426 - -
Bda08g00739 426 SUPERFAMILY Tubby C-terminal domain-like 102 426 IPR025659 -
Bda08g00739 426 Pfam F-box domain 53 100 IPR001810 GO:0005515
Bda08g00739 426 SUPERFAMILY F-box domain 49 97 IPR036047 GO:0005515
Bda08g00739 426 ProSitePatterns Tub family signature 1. 348 361 IPR018066 -
Bda08g00739 426 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 426 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00739 Bda-Chr8:8908663 Bda15g00463 Bda-Chr15:7706302 0 dispersed
Bda08g00735 Bda-Chr8:8827647 Bda08g00739 Bda-Chr8:8908663 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16293 PF01167 Tub 1.30E-114 CL0395 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00739 K19600 - jre:109007061 731.095