Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda08g00739 | ATGTCATTCCGTAGCCTAGTCCGAGATGTAAGGGATAGTATTGGGAGCTTATCCAGACGTGGATTTGAGGTCCGGCTGACTGGCCATAACCGAGAAAAATCATATGGTTCTTGCCATGATTTGCACGATCAGCTTCTCGTGGTTCAGAGCAGCTGCTGGGCCAACCTTCCACCGGAGCTGCTCTATGATGTGATCAGGAGGCTGGAGGAGAGCGAAAGCACTTGGCCTTCGCGTAAGCATGTCATTGCTTGTGCTGCAGTTTGCCGTTCTTGGAGAAACATGTGCAAAGAATTAGTTAAAAATCCTGAAATTTGTGGGAAGCTTACATTTCCTGTGTCTCTAAAGCAGCCAGGGCCACGTGACGGAACCATCCAGTGCTTCATTAAAAGGGATAAGTCGAATTTAACGTACCACCTCTATCTCTGTCTTAGCCCTGCTTTGCTGGTTGAAAATGGGAAATTCCTTCTTTCTGCAAAACGAACACGAAGAACGACTAGCACTGAGTACGTTATCTCAATGGATGCTGAGAACATCTCGAGATCAAGCAGCACCTATATCGGAAAACTAAGGTCAAATTTTCTTGGTACAAAGTTCATCATATACGACACTCAACCTCCATACACGTGTGCTGCCATTCCTTCGCTCGGTAAAACAAGTCAAAGATTCTACTCGAAAAAGGTCTCCCCGAAAGTTCCAAGCGGAAGCTACAACATTGCCCAAATAAGCTACGAACTAAACGTGTTGGGCACTCGAGGCCCGCGAAGAATGCATTGTGTGATGCATTCGATCCCATTTTCATCCCTCGATGTAGGCGGATTTGTCCCTGGACGGCAGGAGCTCCTCCCCCGCACGCTCGAAGACTCATTCCGGAGCATCTCCTTCTCCAAGTCTCTCGATTATTCCATGGAGTTCAGCAGCTCTAGATTCTCTGAAATCGGCAGACGTGTCGACGGCGATGAGGAGGAAAAGACAGTTATACCCTTGGTGCTGAAAAACAAGCCGCCAAGATGGCACGAGCAGTTGCAGTGCTGGTGCTTGAATTTCCGAGGGCGTGTGACGGTTGCTTCTGTGAAGAACTTTCAGTTGATTGCAGCGGCACAGCCGGTGGCTGGGGCTCTAGCGTCATCTCAGCCGACTCCTCCAGAGTACGATAAGATAATTCTTCAGTTCGGGAAGGTCGGTAAAGACATGTTTACGATGGATTACCGGTATCCCTTATCGGCCTTTGAGGCTTTCTCCATTTGCTTGAGCAGCTTCGACACGAAATTGGCTTGTGAATAG | 1281 | 48.48 | MSFRSLVRDVRDSIGSLSRRGFEVRLTGHNREKSYGSCHDLHDQLLVVQSSCWANLPPELLYDVIRRLEESESTWPSRKHVIACAAVCRSWRNMCKELVKNPEICGKLTFPVSLKQPGPRDGTIQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYVISMDAENISRSSSTYIGKLRSNFLGTKFIIYDTQPPYTCAAIPSLGKTSQRFYSKKVSPKVPSGSYNIAQISYELNVLGTRGPRRMHCVMHSIPFSSLDVGGFVPGRQELLPRTLEDSFRSISFSKSLDYSMEFSSSRFSEIGRRVDGDEEEKTVIPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAAQPVAGALASSQPTPPEYDKIILQFGKVGKDMFTMDYRYPLSAFEAFSICLSSFDTKLACE | 426 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 8908663 | 8911326 | + | Bda029219.1 | Bda08g00739 | 11595 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda08g00739 | 426 | Gene3D | Tubby Protein; Chain A | 112 | 420 | IPR025659 | - | |
Bda08g00739 | 426 | Pfam | Tub family | 114 | 421 | IPR000007 | - | |
Bda08g00739 | 426 | Gene3D | - | 48 | 101 | - | - | |
Bda08g00739 | 426 | PRINTS | Tubby superfamily signature | 330 | 347 | IPR000007 | - | |
Bda08g00739 | 426 | PRINTS | Tubby superfamily signature | 185 | 209 | IPR000007 | - | |
Bda08g00739 | 426 | PRINTS | Tubby superfamily signature | 169 | 185 | IPR000007 | - | |
Bda08g00739 | 426 | PRINTS | Tubby superfamily signature | 404 | 426 | IPR000007 | - | |
Bda08g00739 | 426 | PRINTS | Tubby superfamily signature | 383 | 402 | IPR000007 | - | |
Bda08g00739 | 426 | PRINTS | Tubby superfamily signature | 235 | 262 | IPR000007 | - | |
Bda08g00739 | 426 | PRINTS | Tubby superfamily signature | 348 | 364 | IPR000007 | - | |
Bda08g00739 | 426 | PANTHER | TUBBY-RELATED | 1 | 426 | - | - | |
Bda08g00739 | 426 | SUPERFAMILY | Tubby C-terminal domain-like | 102 | 426 | IPR025659 | - | |
Bda08g00739 | 426 | Pfam | F-box domain | 53 | 100 | IPR001810 | GO:0005515 | |
Bda08g00739 | 426 | SUPERFAMILY | F-box domain | 49 | 97 | IPR036047 | GO:0005515 | |
Bda08g00739 | 426 | ProSitePatterns | Tub family signature 1. | 348 | 361 | IPR018066 | - | |
Bda08g00739 | 426 | PANTHER | TUBBY-LIKE F-BOX PROTEIN 10-RELATED | 1 | 426 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda08g00739 | Bda-Chr8:8908663 | Bda15g00463 | Bda-Chr15:7706302 | 0 | dispersed | |
Bda08g00735 | Bda-Chr8:8827647 | Bda08g00739 | Bda-Chr8:8908663 | 0 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16293 | PF01167 | Tub | 1.30E-114 | CL0395 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda08g00739 | K19600 | - | jre:109007061 | 731.095 |