Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00748 ATGGAGATATGTTTTACAGCTTTTGAACAACAATCTAGCAATCCTTTTGCATCCCAATCAGGATTTCCACAAACTACCATTGCAACTGCCAATCCTTTTGCTCCTAAACCCTTCGGCAGTACAAGTCCATTTGGTTCACAAACAGGCACTTCAATATTTGGTGGCACTTCAACTGGTGTCTTTGGTGCACCTCAGGCTTCTTCACCATTCTCTTCTACCACAACCTTTGGAGCTTCATCATCTCCTGCTTTTGGTACTACAATGTCTGCTTTTGGAGCTTCTTCTACTCCTGCTTTGGGTAGTTCATCATCAGCATTTGGAGGGTCGTCTGTCTTTGGGCAAAAGCCTGTTTTTGGAGGCTTTGGATCCACTCCTACTCAAACAAGTCCTTTTATGAGTACAAGTCAACAATCTCAGCCGGCATTTGGCAGCAGCATATTTGGTTCATCCTCTCCATTTGGCGCAACTACACAGTCTGCATTTGGTGCAACAAGCACTCCTACTTTTGGTTCAACAAGCACCCCAGCATTTGGCGCGTCAAGCACCCCGACATTTGGTGCTACAGGCGCCCCATCCTTTGGGGCTACAAGTTCTCCAGCCTTTGGTGCTCCTACCACCCCTTCTTTTGGTTCAACATCTAGTTTGCCATTCGGTAGCACAGGAAGTGCATTTGGTGTGTCAAGTTCCCCTGCTTTTGGATCTGGAGGAGCATTTGGTGCTTCAAACACTCCTGTTTTTGGTTCCCCAAGTACCTCTGCATTTGGCGCTTCAAGTGCACCTGTTTTTGGGGCATCTAGTACTCCTGCTTTTGGAGCTTCTAGTTCTCCGACCTTTGGTTTTGGGTCTAGTCCGGCTTTTGGCCAGTCCACTTCTGCATTTGGCAGCAACATGTTTGGTTCTAATTCAACACCGTTTGGAACCCAGAGCTCTGCTTTTGGGGCTCAATCTACTACTACAACTTTTGGCAGTCAACGTGGAGGCACAAGAATAGCTGCTTACGCTCCTACTACTGAACCAGATAGTGGCAGTGGCTCACAAGGAGCTGGGAAGTTAGAGTCAATATCAGCTATGCCTGTATACAAAGATAAATGCCACGAAGAGTTGAGATGGGAGGATTATCAATTGGGAGATAAAGGTGGACCACTTCCTGCTGGTCAGTCTGCAGTAGGGGTTGGGTTTAATTCATCTACCCCATCACAGCCAAATCTTTTAACTTCATCTGCTACATTTGGCCAAGCTCCTTCTACATTTGGTCAAGCACCTGCTAATCCCTTTTCAACCCCTACATCCTCCAATCCATTCGCTCCAAAAACGTCTGCTTTTGGAGCAACATCAAATTTTTCTTTTAGTTCTTCAGCTTTTGCTCCTTCCACCTCTTCCAATCTTTTTGGATCAACAGTATCACCGTCAACGTCATCATTTATATCAACATCTACTGCCCCATTTGGGAGCTCTCCTTCCTTATTTAATTCATCTAGTACACCTGCTTTTGGGTCTCAGTCTACCTTTGGCTCTGCTACTACTGCAGGAAATACTCCGTCATTTGGTCCGAGCATCAATTTTGGTAACACTCAAACTTCCCCTTTGTTCCCAACTTCTACACCGTCAATTGGGCAGACTGGTTCTGCATTTGGGCAGAGTACTTCGACCTTCGGACAAAATACTACTTCATTTGGTCAATCAAGCTTGGGTACCGCACCTACATCTGTTTTTGGTAACAACCTTTTCTCGAGCGCACCATCACTACTGCCTTCCAGCACTCCAGCTTTTGGTCAATCTCCTTCCACTTTTTCCACACCTTTTCAACCTGCTCAAACACAGCCAGCTGGTGCATTTGGTTTTGGCAACTTCGGTCAGGCACAACCAACTGGTACAAGTGGCATTGGTGGTACATCCAGCATCTTTGGACAGAATGGGTTTGGGCAATTGTCTGCCAGTCATGCTTCTGTGGTTGCCCAGCCTGCACCAGTCACAAATCCATTTGGAACTCTCCCTGTGATGCCGCAAATGTCAATTGGTCGGACCAGAAATACTTCTTCAATTCAATATGGTATTTCGAGCATGCCGGTTTTCGACAAACCTCCTCCTATGAAAATATCTTCCTTGTTGACTTCTCGACATTTATCACAACGAAGAATTAGGTTGCCTGCAAAAAAATATCATCCCATGAAAAATGGTTCGCAGGTTCCATTTTTTAGTGAAGATGAAGAAACACCTGGCACCCCAAAAGCAGATGCTCTTTTTATTCCCAGAGAGAATCCTAGGTCGCTGGTCATTCGTCCTGCAGAACAGTGGTCTGCAAGAACTAGGGCAGAGAAATCTGCATCAATGAAAGATACATTTGGATTGCATTCACCAAGAATGCCGGTCAAAAATTATTGTTGTATTAGTTTGCATGATTTCTTTTTCTTTATTGTAGGAAATTCTGTGGAAAATGTTCTAGAAAAGGAGTCCAATCAGCTTCATGGAGTAAACCAGAAAACGAATGGAAACCTGAAAACCAATGGATTCCATGAGGATAACATTCAAAAAGGGGAGACATATATGACTGTCAATGGCAATCGGGCTGGTGAAGCTGCCATTGCCTATGAACATGGTGCAGACATCGAGGCATTAATGCCAAAACTCCGACTCGCTGATTACTATACAGAGCCTAAAATACAAGAATTAGCAGCCAAGGAGAGAGCTTATCCTGGATTTTGCAGCCATGTGAAGGACTTTGTGGTTGGACGTCATGGTTTCGGAAGCATAAAATTCTTTGGCGAGACGGATGTAAGACGAATTGATTTTGATTCTCTTGTCCAGTTCAACAACCGTGAGGTGATCGTGTACATGGATGATACCAAGAAGCCGCCGGTAGGACAAGGTCTTAACAAACCGGCTGAGGTAACATTACTCAATATCAAATGTTTTGATAAGAAAACAGGCCGGCAATACACGGAAGGGCCAAAAGTTGAGAAGTACAAAGAGATGTTAAAGAGGAAGGCGGAAGATCAAGGTGCCAAGTTTGTCTCGTACGACCCCGTAAAAGGAGAGTGGAAGTTCAAGGTTAATCACTTCAGCAAGTACAGCGTGGGAGATGAAGATGAAGTTAGTGAATGGGAATGA 3108 44.79 MEICFTAFEQQSSNPFASQSGFPQTTIATANPFAPKPFGSTSPFGSQTGTSIFGGTSTGVFGAPQASSPFSSTTTFGASSSPAFGTTMSAFGASSTPALGSSSSAFGGSSVFGQKPVFGGFGSTPTQTSPFMSTSQQSQPAFGSSIFGSSSPFGATTQSAFGATSTPTFGSTSTPAFGASSTPTFGATGAPSFGATSSPAFGAPTTPSFGSTSSLPFGSTGSAFGVSSSPAFGSGGAFGASNTPVFGSPSTSAFGASSAPVFGASSTPAFGASSSPTFGFGSSPAFGQSTSAFGSNMFGSNSTPFGTQSSAFGAQSTTTTFGSQRGGTRIAAYAPTTEPDSGSGSQGAGKLESISAMPVYKDKCHEELRWEDYQLGDKGGPLPAGQSAVGVGFNSSTPSQPNLLTSSATFGQAPSTFGQAPANPFSTPTSSNPFAPKTSAFGATSNFSFSSSAFAPSTSSNLFGSTVSPSTSSFISTSTAPFGSSPSLFNSSSTPAFGSQSTFGSATTAGNTPSFGPSINFGNTQTSPLFPTSTPSIGQTGSAFGQSTSTFGQNTTSFGQSSLGTAPTSVFGNNLFSSAPSLLPSSTPAFGQSPSTFSTPFQPAQTQPAGAFGFGNFGQAQPTGTSGIGGTSSIFGQNGFGQLSASHASVVAQPAPVTNPFGTLPVMPQMSIGRTRNTSSIQYGISSMPVFDKPPPMKISSLLTSRHLSQRRIRLPAKKYHPMKNGSQVPFFSEDEETPGTPKADALFIPRENPRSLVIRPAEQWSARTRAEKSASMKDTFGLHSPRMPVKNYCCISLHDFFFFIVGNSVENVLEKESNQLHGVNQKTNGNLKTNGFHEDNIQKGETYMTVNGNRAGEAAIAYEHGADIEALMPKLRLADYYTEPKIQELAAKERAYPGFCSHVKDFVVGRHGFGSIKFFGETDVRRIDFDSLVQFNNREVIVYMDDTKKPPVGQGLNKPAEVTLLNIKCFDKKTGRQYTEGPKVEKYKEMLKRKAEDQGAKFVSYDPVKGEWKFKVNHFSKYSVGDEDEVSEWE 1035
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9236247 9243151 - Bda029232.1 Bda08g00748 11604

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00748 1035 MobiDBLite consensus disorder prediction 500 559 - -
Bda08g00748 1035 Pfam Nucleoporin autopeptidase 880 1024 IPR007230 GO:0005643|GO:0006913|GO:0017056
Bda08g00748 1035 ProSiteProfiles NUP C-terminal domain profile. 878 1020 IPR007230 GO:0005643|GO:0006913|GO:0017056
Bda08g00748 1035 SUPERFAMILY C-terminal autoproteolytic domain of nucleoporin nup98 872 1027 IPR036903 -
Bda08g00748 1035 PANTHER NUCLEOPORIN 6 1030 IPR037665 GO:0005643
Bda08g00748 1035 PANTHER BNAC05G07920D PROTEIN 6 1030 - -
Bda08g00748 1035 Gene3D Peptidase S59, nucleoporin 875 1027 IPR036903 -
Bda08g00748 1035 Gene3D - 326 378 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00748 K14297 NUP98, ADAR2, NUP116; nuclear pore complex protein Nup98-Nup96 - vvi:100249633 1281.16
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00748 Bda-Chr8:9236247 Bda09g01320 Bda-Chr9:44969398 2.85E-35 dispersed
Bda08g00761 Bda-Chr8:9755235 Bda08g00748 Bda-Chr8:9236247 0 transposed
Bda06g01091 Bda-Chr6:38868933 Bda08g00748 Bda-Chr8:9236247 7.15E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g291 . . . Bda08g00748 Bpe05g00397 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma05g00548 Bma12g00417 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003607 3 2 2 2 1 1 2 1 1 2 1 1 2 1 1 2 1 2 2 1 2 1 1 1 1 1 1 2 3 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00748 Bda_Chr08 FPKM 3.457245 4.009164 11.124622 11.142013 0.894113 0.954409 1.735721 13.411521 12.143433