Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00751 ATGACAATTCCTAGTTCGGGTTCAATGATGGAAGATGGAGGGCCGAGTTGCTTGCCGCTAACTCCCGAGGAAGAGAATCGCATCTTTACAGAATTGATTCGCAAATCTGATTCTAATTTGGAAGATGGAAATTCCTACTACGTTATTTCCAACAGATGGTTTACAAGGTGGACGAAGTATGTTGGTCTATGTACCAAGGAATATTCAATGGATGAGCAGTCTTCTGATACTCAAGCATTAGATATCATTCCATCAAAGTTAGCTGACAGACCTGGACCTATTGATAACTCTGATATTATTTTAGATGGAAAAATTTTCGGGAACAATGATTTAGAGCTCCGAAAGATGCTGGAGGAAGGGCTGGACTATGTTTTAGTTCCTCAATCAGTTTGGCAAAAGCTTTTAGATTGGTACACTGGAGGACCGGCTTTACAGAGAAAGTTGATTGCACAAGGTGTTCACAAGAACTTTGATGTGGAGGCTACTGTTGGTGAGCTTCTTGAGAACGTATGCACACTTAAAGGAATAGAAAAGGAAAAGATGAGTCTGTGGGACTATTTCAACAAGCAAAAACAGTCAGTATTGGATTGTTCAAGTCAAACTCTAGAGGAATCGAACTTACAAATGGATCAAGATGTTCTTCTTGAAGTAAAGATCGAGGGACGTTCATCTGAGAATTCTATGGATTCAACAGGAAATGAGTTTTGCTTGGTAGCTATAGAGCCTTCCCGTTCACCTTTGTCAATTGCTGGGGGGCCTATTATGTCAAATGGTCATTCAACTGGAAATAGTCTATATCAGGGACATTCTATTGGTTCATCGGGTATTGAAACAGATTATTTAACTAATCATGAGATAAAGAAAGAGAAGGGAGGTTTGGCTGGGTTGCAGAATCTGGGTAATACGTGTTTCATGAACAGTGCAATTCAATGTCTAGTCCACACGCCTCCTGTTGTTGAGTATTTCTTGCAAGATTACTCTGAGGAGATTAACGTTGAAAATCCGTTAGGGATGCGTGGGGAGCTTGCTCTTGCATTTGGTGAACTGTTGAGAAAATTATGGTCACCAGGGCGAACTGCAATTGCTCCACGCGTATTTAAGGGAAAATTAGCTCGCTTCGCTCCTCAATTTAGTGGTTACAACCAGCACGATTCTCAAGAACTCCTTGCCTTCTTGTTGGATGGACTGCATGAAGATTTGAACCGTGTGAAGCAAAAGCCTTACTTTGAAATGAAGGATTCTGATGGTCGTGCAGATGAGGAAATTGCTGATGAGTGTTGGAGATACCACAAAGCAAGGAATGATTCATTGATTGTTGATGTTTGCCAAGGTCAATATAAATCAACACTGGTCTGTCCAGAATGTAGCAAAATCTCAATAACATTTGATCCTTTTATGTACTTATCATTGCCACTACCATCAACTCTAACTCGTTCCATAACAGTGACTATATTTTATGGCGATGGTAGTGGTCTTCCAATATCATACACTGTGACTGTACCAAAACATGGTTCCTGTAAAGATCTATCCACAGCTTTAGGTGCTGCTTGTTGCTTGAAAAATAATGAAATCCTTCTGCTTGCAGAGATTTATGATCATCGTGTGTATCGATATTCTATAAAAGATGAAGAATGTATTGTAGCCTACCGCTTCTTTGAAAGAGATGTGGGAAGATCAAAACTAGAGATTATTCATCGATGTCAGGACAAGAGTTCATCAGATCGTTTGAAGAAGAGCAACAGGGGGCAGCTGATATCAATGGGGGCAGTTGTCTCCAAAATTCTCTCTCGCTATGAGAAACATATTCTAACAAACAATGCTAAACCTTTAAACCAGCTGCAATGGCAAACTGAGAGGGGTTTTGGCGGCAAACCTATTGTGAAGGACTCTCTCGTTAGCCTGATAGAAGAACCTTTAGGTCCTCATGACATGTGGTGCAAAGAGCATAGGCAGGCCTCTAAGAAGCTAGACTTGTGGAAGCTGCCGGAGATTATTGTAGTTCACTTGTATGATCTATATGCCATCAGCAACCATTATGGTGGTCCTAGGAGGCGGACCCACACTGCCTATGCCATAGTATTTGACAAGTTCAGATTTTTGTCACCTTTGATGTCCTTTCCATATCTCAGAAAATTGAAAATTTCCATTCCTTTATCTTTAATTGGATGCAACACACCAGAAACTAACAACCACAAGTCTAGTAACAATGCTAAAATTTGGACGTACCTTAATTGA 2235 40.49 MTIPSSGSMMEDGGPSCLPLTPEEENRIFTELIRKSDSNLEDGNSYYVISNRWFTRWTKYVGLCTKEYSMDEQSSDTQALDIIPSKLADRPGPIDNSDIILDGKIFGNNDLELRKMLEEGLDYVLVPQSVWQKLLDWYTGGPALQRKLIAQGVHKNFDVEATVGELLENVCTLKGIEKEKMSLWDYFNKQKQSVLDCSSQTLEESNLQMDQDVLLEVKIEGRSSENSMDSTGNEFCLVAIEPSRSPLSIAGGPIMSNGHSTGNSLYQGHSIGSSGIETDYLTNHEIKKEKGGLAGLQNLGNTCFMNSAIQCLVHTPPVVEYFLQDYSEEINVENPLGMRGELALAFGELLRKLWSPGRTAIAPRVFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYFEMKDSDGRADEEIADECWRYHKARNDSLIVDVCQGQYKSTLVCPECSKISITFDPFMYLSLPLPSTLTRSITVTIFYGDGSGLPISYTVTVPKHGSCKDLSTALGAACCLKNNEILLLAEIYDHRVYRYSIKDEECIVAYRFFERDVGRSKLEIIHRCQDKSSSDRLKKSNRGQLISMGAVVSKILSRYEKHILTNNAKPLNQLQWQTERGFGGKPIVKDSLVSLIEEPLGPHDMWCKEHRQASKKLDLWKLPEIIVVHLYDLYAISNHYGGPRRRTHTAYAIVFDKFRFLSPLMSFPYLRKLKISIPLSLIGCNTPETNNHKSSNNAKIWTYLN 744
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9390556 9401593 - Bda029239.1 Bda08g00751 11607

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00751 744 ProSiteProfiles DUSP domain profile. 20 149 IPR006615 GO:0004843
Bda08g00751 744 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 10-RELATED 15 160 - -
Bda08g00751 744 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 10-RELATED 634 669 - -
Bda08g00751 744 Pfam DUSP domain 43 149 IPR006615 GO:0004843
Bda08g00751 744 MobiDBLite consensus disorder prediction 1 20 - -
Bda08g00751 744 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 10-RELATED 174 564 - -
Bda08g00751 744 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 15 160 - -
Bda08g00751 744 Gene3D - 149 223 - -
Bda08g00751 744 SUPERFAMILY DUSP-like 17 149 IPR035927 -
Bda08g00751 744 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 294 744 IPR028889 -
Bda08g00751 744 SMART dusp 39 152 IPR006615 GO:0004843
Bda08g00751 744 Gene3D - 20 148 IPR035927 -
Bda08g00751 744 Pfam Ubiquitin carboxyl-terminal hydrolase 295 669 IPR001394 GO:0004843|GO:0016579
Bda08g00751 744 SUPERFAMILY Cysteine proteinases 292 691 IPR038765 -
Bda08g00751 744 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 295 310 IPR018200 GO:0004843|GO:0006511
Bda08g00751 744 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 174 564 - -
Bda08g00751 744 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 634 669 - -
Bda08g00751 744 Gene3D Cysteine proteinases 289 700 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00751 - - - mcha:111023427 812.372
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00751 Bda-Chr8:9390556 Bda11g00131 Bda-Chr11:1795381 1.45E-21 dispersed
Bda08g00751 Bda-Chr8:9390556 Bda08g00758 Bda-Chr8:9647337 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g257 . . . Bda08g00751 Bpe05g00390 . . . Cmo06g00541 . Cma02g00946 Cma15g01323 Car02g00695 Car15g01188 . . Cpe05g00767 . . . . . . . . . . . . . . . . . . . Csa05g00158 Chy09g01340 . . . . . . . Bma05g00539 Bma12g00420 . Cmo02g00955 Cmo15g01386 Cma06g00538 . Car06g00476 . Cpe08g00954 . Bhi12g00079 . . . . . Lcy12g1510 Cla01g00140 Cam01g0145 . . Clacu01g0140 Cmu01g0140 Cre09g2366 Lsi09g00131 . . Cme09g01887
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005583 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00751 Bda_Chr08 FPKM 9.243119 9.179356 0.0 0.0 0.0 0.0 0.0 0.0 0.0