Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00752 ATGAAGGGCAGGTCTAACCGCCTTCAGAGTTCGGACCCTCCGGAAGATTGGGTCAATGGGTCCTGGACTGTGGATTGTGTTTGTGGTGTTAATTATGATGATGGAGAGGAGATGGTGAATTGTGATGAGTGTGGAGTGTGGGTGCACACACGCTGTTCACGTTATGTGAAAGGAGATGATATTTTTGTATGTGACAAATGCAAAGGCAAGATCGCTTGTAATGATAGCGAGGAGACAGAGGTTGCACAACTTTTGGTTGAACTTCCTACTAAGACCATGAGAATGGAGAGTAATTGCGCCTCAAATAAGCCTCCCCGCCATCCGCGCAGGCTTTGGACTGAGAAACCAATGGAGGAGAGGGTGCATGTCCAAGGAATTCCAGGCGGTGAGCCTACTTTATTTAGAGGATTATCAACAGTATTCACTCGAGAGCTATGGAAGTCTGGTGGGTACGTTCCCAAAAAGCTTAACTTTCAATATAAGGAGTTTCCTTGTTGGGATGAGAAGTTAGAAACTGGAAGTAAAAATGAGGAAGAAAATGATAATAACGGTGCTGGCGTTCTCTTTTCTTTATCAAAAGAGGCTGTATTGCCTACCCCAGTTGCAACTTTGACTGATTTGAGACTCAATGTCGAGAATGAAGTTTGTGATAGGAAGGCCTTCTTGAAAGAAAGTAATAAGTGGGAAATTGATGATATAGATATTAAGCAGGGTATGGAGAAAGAAAGAAGCATCCTTCAGCCTGTTTTACTACATTCAGGTAGTGGAAAGAAGGAGGATCTTGTCACAACTAGGGATCGGAGTGGTAAGAGGAAGGCCAGAGCTTCTGACAAGAAAGATGATACGAAGAAAATCATATCACATTCAGCTAAAACTGTGCTTACACAATCACGGGAGGAGAAACAATCGGAACTTCATGAAGGCAGAGGTCAAAATAATTCCAAGATTGACAGTCAAAGTACTAAGAACAATATTTTGCAGGAATCAGTGGTTTGTGGGCCTGTATTAGATGTGCCTGCTACAACAGATAAAAATCTTGAACAGTCCAAAAATATCAAATCACCTCATGAGCTATCTTCTGGTGCCTTCTCTTCTGTAATGTATGAGAATAATCTTTTAAATGGATCTGAAAGAAAGGAAGAGAAGGCTGGCAGTCAAATTCCACTAGTGGTAATTAAGAGTTCCTCCAAAACTGAGAGTCCTGGATCCTCACTGTTGGAACGAACTGATGCTGGAAAATTTTCTATTCAACAGGAGGGAGATGATGCAATGATTAATGTTTCAGATGATAGTGTTAGAGGTTCAGCTCGATTTGTTGTTAAGTCTTCCGTTCAAGATCTATCTAGTGCCACACAAGAAGTAAAGGGCTCTATTGTTCTTGAAGATTTTGATGGTGATGTATCCTTGAACTCGGCACAAGCGAAAATGGAACTGCAGCATGATAGGGAATCACCAAACATCCAGTCTTCTCTTGGCAATGCAAAAGAACTGCGGATACTGACTGATCAGATGTCAGAGAATTTAAAAGTGAATGATGCTGCACTTTGCAGTTCGCAATCTGATGGCCACAAGATGCAAGAAGTTGATAAAGGTTCTGAAGCAGTAAGTGATTATTGTGCTGATCAAGCTGATGGCCAATCAAGTGGTCCTTGTCACTATAAGGGAGAATTAGATTGCTCAAAAGGTTTCAAGGCAGTGGAAAGTTCTTCAGACCCCAAAAAGGGTTCTTTGTTTGCTGCAGAGCAATCAAAATTTGGTGGAACTGTTTTGAACTCACAACCCGTGCCGAATCATAAAATTGCGTTGCCTGTTGGAAAATCATCACCCGTGCCAACCACAATTGTAATCACTACTAAATCATCTTCTGGTAGCATTAAACCTGTAGATGTTACTAATCCTCCTTTGACTTCCCAGCAGAGGGTAATGTCTGGTAGTAGTGCTAGTGGTAGGAAAGAAGGTAACTCGAGTGATGTAATTAGGGATGAAGAGAGGGAAGAAAAACCTAGGAAAACAATAAAAGAGCAACCAAAACCAGATGCCAATACTTCTCCAAAAATATTGATGTCTAACAGAACATCACAAGATTTTGTTTCCAAGAGATGTTTGTCAGGATCAAAAGATTTTGTAGTTTATTCCTCTTCCAAAGCATCCTCAGCAAATATTATCAAAGCTAATACAGGGTCTGGAGAGTCCAAGGGACCACAGCGCAATCAGAAGCCTCTACATGCTCATAACAAGACTGCTAGTTTAGGTTTGTCTCAGAAAGGCGAAAAGTCTAACCAGACCCACATTCCCGCTTCATCTAAGGTTACTCAGAACCATCCATATCCTCCTGTGCCTTCAAATATTCATGCGAATCTCAGTGATGAAGAGCTTGCTTTGCTTTTGCATCAAGAACTCAACAGTTCTCCAAGAGTACCTCGCGTCCCTCGATTACGCCACTCAGGTAGTTTACCACAACTAGCCAATCCAAGTGCGACAAGCATTCTGGTAAAGCATTCATCAAGCTCTGGAGTAAAAGATCTCGGATCGGTTTCTAGAAGAAAAGTGAAAGATGTTTCAAAGGATTCAATTCGAAATTGTCGTGACCCTGATGATGAAGCTAAGAAGACTGCAAGACTACCACATTCTTCACTGGATCAGAGAAAAAATGTTGCATCGCCTGCTACTGATGCTTCAATAAAGAGGGATGACACCAGATCATCTCCTAGAATGGTAGTTAGGAAGAACATTTCCTCAGCCTCTACAACTGCAAGTAGTGGCCCTTCATCATCAACAGAAGTTAATGATCGTAATGTGTCATCTATACGTAATTCACCAAGAAACACTTCTGATGAAGATACAGGAACTGTTGGGGGTCCTGTTAATCGCACTTTGCCTGGGTTGATTGATGAGATCCTGAGCAAAGATAGGCGGCAGACATATGAAGAACTATGTAATGCAGTCTTGCCGCATTGGCATACCTTAAGGAAACATAATGGGGATAGGTATGCTTACTCGAGTCATTCACAAGCTGTTTTGGATTGTCTGAGGAACAGATATGAGTGGGCACAGTTGGTTGACCGTGGTCCCAAAACAAATTCAAGTAGGAAAAGACACAAACTTGATGCAGATGAATCTGAAGATAGTGAGCAAGGAAAAGGAAGGACAATGAGAGATGTTGAGAGTAAAAGTCTCGATTCGCACAAAGAGGAATTTCCAAAGGGCAAGAGAAAAGCAAGAAAGCGGAGGCGACTGGCTCTTCAAGGAAGAGGAGTAAAAGATTTGAGGAAAAGAAGGAAGACCGATATACTTGATGATGAAGTCGGGCAGGTCACAATCTCGAGTGAGGAAAGCATTTTCAGCGAGGACGAGATTCGAGATGGGGAAGGATGTCGACAAGGAAGTGAGGCATCTGACAGTTCAGAGGAGGCAGGGAACTTGTAG 3426 42.21 MKGRSNRLQSSDPPEDWVNGSWTVDCVCGVNYDDGEEMVNCDECGVWVHTRCSRYVKGDDIFVCDKCKGKIACNDSEETEVAQLLVELPTKTMRMESNCASNKPPRHPRRLWTEKPMEERVHVQGIPGGEPTLFRGLSTVFTRELWKSGGYVPKKLNFQYKEFPCWDEKLETGSKNEEENDNNGAGVLFSLSKEAVLPTPVATLTDLRLNVENEVCDRKAFLKESNKWEIDDIDIKQGMEKERSILQPVLLHSGSGKKEDLVTTRDRSGKRKARASDKKDDTKKIISHSAKTVLTQSREEKQSELHEGRGQNNSKIDSQSTKNNILQESVVCGPVLDVPATTDKNLEQSKNIKSPHELSSGAFSSVMYENNLLNGSERKEEKAGSQIPLVVIKSSSKTESPGSSLLERTDAGKFSIQQEGDDAMINVSDDSVRGSARFVVKSSVQDLSSATQEVKGSIVLEDFDGDVSLNSAQAKMELQHDRESPNIQSSLGNAKELRILTDQMSENLKVNDAALCSSQSDGHKMQEVDKGSEAVSDYCADQADGQSSGPCHYKGELDCSKGFKAVESSSDPKKGSLFAAEQSKFGGTVLNSQPVPNHKIALPVGKSSPVPTTIVITTKSSSGSIKPVDVTNPPLTSQQRVMSGSSASGRKEGNSSDVIRDEEREEKPRKTIKEQPKPDANTSPKILMSNRTSQDFVSKRCLSGSKDFVVYSSSKASSANIIKANTGSGESKGPQRNQKPLHAHNKTASLGLSQKGEKSNQTHIPASSKVTQNHPYPPVPSNIHANLSDEELALLLHQELNSSPRVPRVPRLRHSGSLPQLANPSATSILVKHSSSSGVKDLGSVSRRKVKDVSKDSIRNCRDPDDEAKKTARLPHSSLDQRKNVASPATDASIKRDDTRSSPRMVVRKNISSASTTASSGPSSSTEVNDRNVSSIRNSPRNTSDEDTGTVGGPVNRTLPGLIDEILSKDRRQTYEELCNAVLPHWHTLRKHNGDRYAYSSHSQAVLDCLRNRYEWAQLVDRGPKTNSSRKRHKLDADESEDSEQGKGRTMRDVESKSLDSHKEEFPKGKRKARKRRRLALQGRGVKDLRKRRKTDILDDEVGQVTISSEESIFSEDEIRDGEGCRQGSEASDSSEEAGNL 1141
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9430169 9436362 - Bda029240.1 Bda08g00752 11608

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00752 1141 MobiDBLite consensus disorder prediction 258 287 - -
Bda08g00752 1141 MobiDBLite consensus disorder prediction 844 877 - -
Bda08g00752 1141 MobiDBLite consensus disorder prediction 905 951 - -
Bda08g00752 1141 MobiDBLite consensus disorder prediction 832 959 - -
Bda08g00752 1141 MobiDBLite consensus disorder prediction 805 824 - -
Bda08g00752 1141 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SET-26-RELATED 1 1138 - -
Bda08g00752 1141 MobiDBLite consensus disorder prediction 256 320 - -
Bda08g00752 1141 MobiDBLite consensus disorder prediction 654 676 - -
Bda08g00752 1141 MobiDBLite consensus disorder prediction 617 653 - -
Bda08g00752 1141 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 73 IPR013083 -
Bda08g00752 1141 PANTHER UNCHARACTERIZED 1 1138 - -
Bda08g00752 1141 SUPERFAMILY FYVE/PHD zinc finger 14 71 IPR011011 -
Bda08g00752 1141 ProSitePatterns Zinc finger PHD-type signature. 26 67 IPR019786 -
Bda08g00752 1141 MobiDBLite consensus disorder prediction 1113 1127 - -
Bda08g00752 1141 MobiDBLite consensus disorder prediction 1082 1100 - -
Bda08g00752 1141 MobiDBLite consensus disorder prediction 617 692 - -
Bda08g00752 1141 MobiDBLite consensus disorder prediction 750 784 - -
Bda08g00752 1141 MobiDBLite consensus disorder prediction 750 779 - -
Bda08g00752 1141 MobiDBLite consensus disorder prediction 294 311 - -
Bda08g00752 1141 MobiDBLite consensus disorder prediction 1021 1141 - -
Bda08g00752 1141 MobiDBLite consensus disorder prediction 1030 1067 - -
Bda08g00752 1141 SMART PHD_3 25 68 IPR001965 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00752 - - - zju:107403796 1125.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00752 Bda-Chr8:9430169 Bda10g01164 Bda-Chr10:45667404 4.94E-06 dispersed
Bda08g00752 Bda-Chr8:9430169 Bda08g00759 Bda-Chr8:9692566 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g256 . . . Bda08g00752 Bpe05g00387 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0587 Cone12ag0579 . . . . . . . . . . . . Bma05g00538 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004431 2 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 5 4 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00752 Bda_Chr08 FPKM 3.736469 3.361521 1.479196 1.705704 0.653473 1.110002 1.458469 1.923679 1.378013