Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00753 ATGGGAAACTGTCTGTTTAGGGGACTGTCAGATGTCAGTGTAGCAATCAAAGTAATCACGTCGAACGGCGGAATCATGGAGTTCTACTCTCCCATAACAGTCGGATCCATCACCGACGAGTTCCCCGGCCACAGCATATTCAGCAGCCACGATCTCTTCCACAAGCCACTTTCTCACCATGAAGAGCTTTTTCCCGGAAAATCTTACTACTTACTACCTCTCGCCGACCAGACTGTTCCAACCCGAGAAGGCCACGCGAGGTCAAACAGCTTACCGGACTCCGTCTGCGCTCCGTACCGCATGTCGTTTGATGACGGGAGGGAGACGAAGAGGTATTATGGAGAAGCATTTTCAAGGGAAGATAAGAGGAGTGGGATTTGGAAAGTGAAGCTGGTGATTACTCCTAAGCAGCTTGTAGAGATATTGGAGGGAGAGGGTTCGACGGAGGAGCTATTACAGAGTGTGAGGACTGTTGCTAAGTGTGGAAGCTTCGTTGGATATTCTGATCATTGGAGTCTTTCAAGCTATGGCAGCGGCAACGCTTAA 546 49.63 MGNCLFRGLSDVSVAIKVITSNGGIMEFYSPITVGSITDEFPGHSIFSSHDLFHKPLSHHEELFPGKSYYLLPLADQTVPTREGHARSNSLPDSVCAPYRMSFDDGRETKRYYGEAFSREDKRSGIWKVKLVITPKQLVEILEGEGSTEELLQSVRTVAKCGSFVGYSDHWSLSSYGSGNA 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9555056 9555601 + Bda029243.1 Bda08g00753 11609

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00753 181 Pfam PADRE domain 1 143 IPR025322 -
Bda08g00753 181 PANTHER DUF4228 DOMAIN PROTEIN 1 173 - -
Bda08g00753 181 PANTHER PLASTID MOVEMENT IMPAIRED PROTEIN-RELATED 1 173 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00753 - - - pvy:116117247 223.402
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g01087 Bda08g00753 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00753 Bda-Chr8:9555056 Bda11g00394 Bda-Chr11:4279654 1.78E-41 dispersed
Bda06g00158 Bda-Chr6:2287193 Bda08g00753 Bda-Chr8:9555056 1.43E-17 transposed
Bda10g01192 Bda-Chr10:45902002 Bda08g00753 Bda-Chr8:9555056 9.07E-06 transposed
Bda06g01087 Bda-Chr6:38751463 Bda08g00753 Bda-Chr8:9555056 4.29E-101 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g253 . . Bda06g01087 Bda08g00753 Bpe05g00385 . . . . Cmo16g00658 . . . . . Cpe14g00513 . . . . . . . . Cla07g00788 Cam07g0851 Cec07g0904 Cco07g0886 Clacu07g0826 Cmu07g0829 Cre07g1187 Cone8ag0557 Cone12ag0556 . . . . . Cme07g01643 . . . . . . Bma05g00535 Bma12g00421 . . . . Cma16g00604 . . . . . . . . . . . . . . . . . . . Csa04g00584 Chy07g01227 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006548 2 1 1 2 2 1 2 1 1 1 1 1 2 1 0 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00753 Bda_Chr08 FPKM 3.039652 3.00568 5.147758 5.031177 17.595154 18.220631 18.559708 5.035976 4.232359