Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00769 ATGGCTACCTCTGCTCACTCAATCCTCCGTACGCCATCGATTCGAGATTCCTCTGTTTCTCTTTCCTCCAAGTTGCCTGTCTTTTCGCCTCTATCCGTTCGTTTTCGCTCTCGGCGAACACGATCGCACGTCTTCGTTGTTGTGTCGGCAGGTCTCGATGCCAAGCCGACGGTTCTCGTTGCTGAAAAGCTCGGTGAAGCTGGTCTTTCGCTTCTCAAGGACTTTGCTAATGTTGATTGTTCGTATAATCTGAGTTCGGAGGAGCTGTGCACTAAGATCTCGCTCTGTGATGCGCTTATTGTGCGTAGTGGAACCAAGGTCAGTCGCGAAGTGTTTGAATCTTCTGGAGGGAGATTGAAGGTGGTTGGGAGGGCTGGGGTTGGTATTGACAATGTGGATCTCGCGGCGGCGACTGAGCATGGTTGCTTGGTGGTGAATGCGCCGACTGCCAATACTGTTGCTGCTGCGGAGCATGGGATCGCTCTCTTGACTGCTATGGCGAGGAACGTCGCCCAAGCCGATGCGTCTGTTAAAGCTGGAAAGTGGGAACGAACCAAGTATGTTGGTGTATCCCTCGTCGGAAAAACACTGGCTGTTATGGGTTTTGGGAAAGTTGGAACAGAAGTTGCTCGACGTGCAAAGGGACTTGGTATGCACGTCATTGCACATGACCCATATGCTCCAGCTGATCGGGCCCGTGCCATAGGTGTGGAGCTTGTGAGCTTTAACGAAGCTATTGCAACTGCAGACTTCATCTCTTTGCACATGCCTCTGACAGCCTCTACTTCAAAAATTCTTAATGATGAAACTTTTGCTAAAATGAAGAAAGGAGTTCGTATAGTCAATGTTGCTCGGGGTGGGGTAATTGATGAAGAAGCTCTAGTGAGGGCGCTAGATGCTGGAACTGTTGCACAGGCAGCTCTTGATGTTTTCACAGAGGAACCACCTCCAAAAGATAGCAAGTTGGTTCTGCACGAGAAAGTTACTGTAACACCTCACCTTGGAGCCAGTACCATGGAAGCACAGGAAGGTGTGGCTATTGAAATTGCTGAAGCTGTAGTTGGAGCCTTGAGAGGGGAGCTTGCAGCAACTGCAGTTAATGCCCCCATGGTTCCTGCAGAGGTATTGCTATTGTGCTTGTTCTCATTGTATTTTTCAATACCAATTCTTTTTGTGCAGGTCTTAACTGAACTGAAGCCGTATGTTTTACTGGCTGAGAAATTGGGAAGACTGGCCGTACAACTTATAGCCGGAGGAAGTGGTGTTAAAACTGTGAAAGTGACTTATGGTTCAACGAGAGCTCCTGATGATCTTGACACCAGGCTTCTCCGTGCCATGATAACAAAGGGTCTGATTGAGCCGATATCCAGTGTTTTCGTGAACTTGGTCAATGCTGATTTTACTGCTAAGCAGCGGGGACTGCGAATAACCGAAGAGCGAATTGTTCTAGATGGATCCCCAGAAAATCCACTGGAGTTTGTTCAAGTTCAGATCGCCAATGTGGAGTCAAGATTTGCAAGTGCAATATCAGATTCAGGAGAGATAAGGGTTGAAGGACGGGTAAAGGATGGAGTTCCTCACCTGACAAAGGTTGGATCTTTTGACGTTGACGTGAGTTTGGAAGGTAGTATTATTCTCTGTAGACAGGTTGATCAGCCAGGTATGATTGGAAAGGTGGGGAGCATTTTAGGAGAGGAGAATGTAAATGTCAGCTTCATGAGCGTAGGCAGAATCGCTCCGAGAAAGCAAGCTCTAATGGCTATAGGAGTGGATGATCAACCCAGCAAGGAATCCTTGAAGAAAATAGGCGAAATTTCGGCAGTCGAGGAGTTTGTCTTCCTCAAATTGTAG 1851 47.81 MATSAHSILRTPSIRDSSVSLSSKLPVFSPLSVRFRSRRTRSHVFVVVSAGLDAKPTVLVAEKLGEAGLSLLKDFANVDCSYNLSSEELCTKISLCDALIVRSGTKVSREVFESSGGRLKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASVKAGKWERTKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMHVIAHDPYAPADRARAIGVELVSFNEAIATADFISLHMPLTASTSKILNDETFAKMKKGVRIVNVARGGVIDEEALVRALDAGTVAQAALDVFTEEPPPKDSKLVLHEKVTVTPHLGASTMEAQEGVAIEIAEAVVGALRGELAATAVNAPMVPAEVLLLCLFSLYFSIPILFVQVLTELKPYVLLAEKLGRLAVQLIAGGSGVKTVKVTYGSTRAPDDLDTRLLRAMITKGLIEPISSVFVNLVNADFTAKQRGLRITEERIVLDGSPENPLEFVQVQIANVESRFASAISDSGEIRVEGRVKDGVPHLTKVGSFDVDVSLEGSIILCRQVDQPGMIGKVGSILGEENVNVSFMSVGRIAPRKQALMAIGVDDQPSKESLKKIGEISAVEEFVFLKL 616
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10010480 10013310 + Bda029271.1 Bda08g00769 11625

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00769 616 CDD ACT_3PGDH-xct 545 616 - -
Bda08g00769 616 TIGRFAM PGDH: phosphoglycerate dehydrogenase 58 614 IPR006236 GO:0004617|GO:0006564
Bda08g00769 616 Pfam D-3-phosphoglycerate dehydrogenase intervening domain 397 516 IPR045626 -
Bda08g00769 616 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 55 184 - -
Bda08g00769 616 Pfam ACT domain 544 602 IPR002912 -
Bda08g00769 616 SMART AdoHcyase_NAD_2 185 354 IPR015878 -
Bda08g00769 616 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 274 290 IPR029753 -
Bda08g00769 616 Gene3D - 392 542 IPR029009 -
Bda08g00769 616 Gene3D - 151 333 - -
Bda08g00769 616 PANTHER FORMATE DEHYDROGENASE 1 34 611 - -
Bda08g00769 616 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 160 335 IPR006140 GO:0051287
Bda08g00769 616 CDD PGDH_4 58 360 - -
Bda08g00769 616 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 245 267 IPR029753 -
Bda08g00769 616 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 154 336 IPR036291 -
Bda08g00769 616 ProSiteProfiles ACT domain profile. 544 616 IPR002912 -
Bda08g00769 616 SUPERFAMILY ACT-like 534 612 IPR045865 -
Bda08g00769 616 Gene3D - 543 616 - -
Bda08g00769 616 PANTHER D-3-PHOSPHOGLYCERATE DEHYDROGENASE 34 611 - -
Bda08g00769 616 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 58 367 IPR006139 GO:0016616|GO:0051287
Bda08g00769 616 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 197 224 IPR029752 -
Bda08g00769 616 Gene3D - 60 360 - -
Bda08g00769 616 SUPERFAMILY Serine metabolism enzymes domain 393 538 IPR029009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00769 K00058 serA, PHGDH; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] - csv:101221689 984.941
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00630 Bda-Chr5:54426192 Bda08g00769 Bda-Chr8:10010480 2.82E-25 dispersed
Bda08g00769 Bda-Chr8:10010480 Bda08g00808 Bda-Chr8:11356525 0 dispersed
Bda11g00902 Bda-Chr11:8832868 Bda08g00769 Bda-Chr8:10010480 3.59E-19 dispersed
Bda08g00769 Bda-Chr8:10010480 Bda01g00578 Bda-Chr1:32802761 4.12E-137 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g618 Blo02g00840 . . Bda08g00769 . . Bma05g00525 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo04g00509 Cmo16g00367 . . . . Cpe14g00284 Cpe01g00426 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001181 3 2 4 3 3 1 4 2 2 2 2 2 3 2 2 4 2 6 4 2 2 2 3 2 2 2 2 3 2 3 78
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00769 Bda_Chr08 FPKM 25.157921 28.7911 30.655838 32.098206 25.848335 21.921251 27.214697 39.765781 38.14164