Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00772 ATGGCGATTGTTAAAAGTGAAGAAACAGAAGAAGAGAGACAGAAGAGTTTGTTCTTTTTAGACTCTCTCTACTGTTACGAAGAGAGATGGGAGGAAGACGAAGACGAAGAAGAAGATGATGAATGTGAAGAGAGTTCAGAAGAAGAAGAAGAAGAAGAAGAGCTTCTCTCTCTAATCTCCAAAGAAGAAGAAGAACACCAACGTCAGATTGTGGAAAATTTCAAATGTGATACAGTTCTGTGTTTGGCTCGCTCTGAGGCTGTGAAGTGGATTCTAAAAGTTAAAACCCAGTTTGGATTCTCAGCTTTGACCGCCATTTTAGCCATCAACTACCTCGATCGGTTCTTGTCTAGTCTACAGTTTCAGAGAGAGAAGCCATGGATGAGTCAACTCGTTGCCGTTGCTTGCCTCTCACTTGCAGCGAAAGTGGAAGAAACACAAGTCCCTCTTCTTCTCGATCTTCAAGTAGAGGAGACAGAATTTGTCTTTGAAGGGAAAACGGTTCAGAGAATGGAGCTTCTTGTTCTTTCTGCTCTTCAATGGCGGATGCATCCAGTAACTCCATATTCATTTATGGATCTCATCGCCAGGAAGATCGGATTAAAGACCAATTTATATCATGAATTTCTTAGTCTTTTCGATAGTCTTCTTCTCTCACTACTCGCAGATTCAAGATCCGTGAGTTATCTTCCTTCTGCCATAGCTGCCGCTGCAACGGTGAGAATTTTAGACGAGATAGAGCCCCGTAAATCAATGGAATACAAGAACCAGATTCTGGGTATTCTTAAAATGAACAAAGATAATTTAAGTGACTGTTACGGTCTGTTACTTGAGCCGTCGAACGATATCAATGGCGGTGAAACCTCCGTAAGGAGAAGATTCTATCAAGTTACCGGGAGGCCAAATGGAGTCGGCGATGCTGTTTTTAGCTCCGACTGCTCTAATGATTCCTGGTCTGTGCTTTCTTCCCCTGTTTCTCCTCTCGTAGAACCGCCATTAAAGAAAAGCAGAGCTCAAAATCAGATGGCGAAATTTCCATCCTTGGTTACTTGA 1053 42.45 MAIVKSEETEEERQKSLFFLDSLYCYEERWEEDEDEEEDDECEESSEEEEEEEELLSLISKEEEEHQRQIVENFKCDTVLCLARSEAVKWILKVKTQFGFSALTAILAINYLDRFLSSLQFQREKPWMSQLVAVACLSLAAKVEETQVPLLLDLQVEETEFVFEGKTVQRMELLVLSALQWRMHPVTPYSFMDLIARKIGLKTNLYHEFLSLFDSLLLSLLADSRSVSYLPSAIAAAATVRILDEIEPRKSMEYKNQILGILKMNKDNLSDCYGLLLEPSNDINGGETSVRRRFYQVTGRPNGVGDAVFSSDCSNDSWSVLSSPVSPLVEPPLKKSRAQNQMAKFPSLVT 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10024538 10025922 - Bda029274.1 Bda08g00772 11628

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00772 350 PANTHER CYCLINS 44 336 IPR039361 -
Bda08g00772 350 CDD CYCLIN 84 176 IPR013763 -
Bda08g00772 350 Gene3D - 62 273 - -
Bda08g00772 350 Pfam Cyclin, N-terminal domain 82 183 IPR006671 -
Bda08g00772 350 SUPERFAMILY Cyclin-like 51 184 IPR036915 -
Bda08g00772 350 ProSitePatterns Cyclins signature. 84 115 IPR006671 -
Bda08g00772 350 PANTHER CYCLIN D3.1 PROTEIN 44 336 - -
Bda08g00772 350 Coils Coil 32 65 - -
Bda08g00772 350 MobiDBLite consensus disorder prediction 30 56 - -
Bda08g00772 350 MobiDBLite consensus disorder prediction 330 350 - -
Bda08g00772 350 Gene3D - 68 184 - -
Bda08g00772 350 SMART Cyclin_C_2 186 313 IPR004367 -
Bda08g00772 350 SUPERFAMILY Cyclin-like 168 277 IPR036915 -
Bda08g00772 350 Pfam Cyclin, C-terminal domain 186 288 IPR004367 -
Bda08g00772 350 SMART cyclin_7 89 177 IPR013763 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00772 K14505 CYCD3; cyclin D3, plant - vvi:100264093 301.212
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda08g00772 Bda14g01452 CCT
Bda08g00772 Bda15g00846 CCT
Bda08g00772 Bda14g01452 ECH
Bda08g00772 Bda15g00846 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00772 Bda-Chr8:10024538 Bda15g00846 Bda-Chr15:12997850 9.68E-96 dispersed
Bda08g00772 Bda-Chr8:10024538 Bda14g01452 Bda-Chr14:19597163 1.34E-103 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g609 Blo02g00838 . . Bda08g00772 . . Bma05g00508 . Cmo19g00602 Cmo11g01386 . . . . . Cpe04g00298 Cpe15g00473 . . . . . . . Cla02g00627 Cam02g0660 Cec02g0664 Cco02g0687 Clacu02g0668 Cmu02g0662 Cre02g0981 . Cone8ag1114 . . Lsi03g00524 Csa07g00732 . Cme01g00076 . . Bda15g00846 Bda14g01452 . . Bma03g01357 . . Cmo04g00511 Cmo16g00370 Cma11g01728 Cma19g00585 Car11g01112 . Cpe14g00286 Cpe01g00427 . . . . . . . . . . . . . . . . Chy01g00082 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003809 3 1 2 4 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 2 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00772 Bda_Chr08 FPKM 1.16972 0.99925 6.224855 5.922311 16.872538 16.273581 16.14525 0.556674 0.490322