Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00779 ATGGGTAGAATTATTGCTTTGTTTTGCATTTCCAATTTCTTTCCCTTCTCTTGTTTTGCTCCTCCAGTTTGTTGTCTCAATGCTCCTCCACTGCTCCCGTCCGAAAGAGAGACCTTGGAAATAATAATTGGCGGTGGCGGTGGCGGTGGCGGTGGCAGTGGAGGAGGTGGTGGAATCTCCTCCCCTTCTCCTTCCCCTGAATACCAACAGCCTTGTCCCCCTCCCGGCGTTCCCCCTTTACCACCTCCAATTCCACCACCTTTACCGCCGCCTCGTAGATCTCCTTCAAGACCAAAACCGGCGTTGAATTTTGAAAACGATCGCCTCCGAAATGCTTATTTTGTCATTCAAGAATTCAAAACCAAAATCACCTCCGACCCCTTTCGCATCACAGATACATGGAACGGCTCCAATGTTTGCCACTACTCTGGGTTCGGTTGCGACCGGTTACTGAACACCAACGAGAGAACCATCTCCGGCGCTGACTTCAATGGCCGTTTACTTTATGGCCCCCAACTATCACTCGACGGACTCCTGAACAGATTACCCGACATCACTTTTTTTCACGCAAATTCCAACAATTTCACCTGCGGTATACCCAAAAACATAAGCCAACTCCAGTTCTTCTACGAGTATGACCTGAGCAGCAACAACTACTCCGGCGAGTTTCCGGTGGAAATCCTCAGTGCAAGTAAGCTCCTCTTCTTGGATCTCCGTTTCAACAACTATCATGGCCCAGTCCCTACTCAACTCTTCTATCTTGATCTTCAAGTTATCTTCATCAACAACAACCGGTTCACCGGAGAACTGCCCAAAAATTTTGGATCCACTCCGGCTAATTATCTGACCTTTGCCAACAACCAGTTCACCGGTCCAATTCCAAGAAGCATAGGACAAGCTAATAAAACTCTGGTCGAAGTTCTTTTCTTGGGCAACAAATTCACCGGATGCTTGCCTTACGAAATGGGATTTCTCGAAAATGCCACCTTGATCGATGTAAGCAAAAACTATCTCACAGGACCAATTCCTCTCTCTTTCGCCTGTTTATCGAAAATGGAGCTTCTGAACTTAGCCGATAACAAGTTCTACGGAATAGTGCCGGAGATAGTCTGCAAGCTGCCGAATATCGGAAACTTGACATTAAGAAACAACTTCTTCACTCAAATCGGACCCGCTTGCCGGATTTTGTTGAACAAGAAGATTCTTGACGTTTCAATGAACTGCATTTTGGGTCTTCCGGATCAGAAATCAGAGGTCGAGTGTTCTGCTTTCTTCTCCAAACCCTACTCTTGTCCCGACGTAATTATTCCCCGTTCCATTCCTTGCAAGAATATGTGGTACTTGCATTCTAATGTGGCATCTCCGGCCAACAACGACGCAGCATCATCTTCTTCCTGGAAAACCTATGATGCTCTTAGTCCTCATAATTTCTAG 1434 46.51 MGRIIALFCISNFFPFSCFAPPVCCLNAPPLLPSERETLEIIIGGGGGGGGGSGGGGGISSPSPSPEYQQPCPPPGVPPLPPPIPPPLPPPRRSPSRPKPALNFENDRLRNAYFVIQEFKTKITSDPFRITDTWNGSNVCHYSGFGCDRLLNTNERTISGADFNGRLLYGPQLSLDGLLNRLPDITFFHANSNNFTCGIPKNISQLQFFYEYDLSSNNYSGEFPVEILSASKLLFLDLRFNNYHGPVPTQLFYLDLQVIFINNNRFTGELPKNFGSTPANYLTFANNQFTGPIPRSIGQANKTLVEVLFLGNKFTGCLPYEMGFLENATLIDVSKNYLTGPIPLSFACLSKMELLNLADNKFYGIVPEIVCKLPNIGNLTLRNNFFTQIGPACRILLNKKILDVSMNCILGLPDQKSEVECSAFFSKPYSCPDVIIPRSIPCKNMWYLHSNVASPANNDAASSSSWKTYDALSPHNF 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10499587 10501020 + Bda029290.1 Bda08g00779 11635

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00779 477 SUPERFAMILY L domain-like 119 411 - -
Bda08g00779 477 MobiDBLite consensus disorder prediction 66 97 - -
Bda08g00779 477 PANTHER BNAC05G26270D PROTEIN 25 474 - -
Bda08g00779 477 MobiDBLite consensus disorder prediction 42 102 - -
Bda08g00779 477 Gene3D Ribonuclease Inhibitor 114 280 IPR032675 -
Bda08g00779 477 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 25 474 - -
Bda08g00779 477 Gene3D Ribonuclease Inhibitor 281 424 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00779 - - - bhj:120079650 433.721
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01603 Bda-Chr1:51886698 Bda08g00779 Bda-Chr8:10499587 2.02E-116 dispersed
Bda08g00779 Bda-Chr8:10499587 Bda15g00023 Bda-Chr15:1609102 1.26E-103 dispersed
Bda08g00779 Bda-Chr8:10499587 Bda11g01541 Bda-Chr11:47731550 3.67E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g564 . . . Bda08g00779 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo04g00513 . . . . . Cpe14g00287 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000853 1 2 2 1 2 3 4 3 3 3 3 3 5 3 3 5 3 6 4 3 3 2 1 4 4 4 2 4 3 1 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00779 Bda_Chr08 FPKM 9.092025 10.100762 29.060747 25.873966 45.217499 36.775509 43.62994 34.412777 29.715366