Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00841 ATGGAATCAGCCCAGTACTATTCAGAGAACAATATTGCAATCGCACGAAGGAAAGGTTATAGTATTATAATGACCACCAGTCTCTCCTCTGATGTTCCCGTCGGGTATTTTTCGTGGGCGGAGTATGATATCATGGCACCAGTACAACCAAAGACTAAGACATCACTTGCTGCTGCTTTTATTTCAAATTGCGGTGCTCGTAACTTTCGGTTGGAAGCTCTGGAAGCTCTTGAAAAGTTGAAAATAAAGATTGATTCGTATGGTGGTTGCCACAGGAACCGTGACGGAAGAGTGAACAAGGTGGAGGCTCTGAAGCGATATAAATTTAGCCTGGCATTTGAGAACTCCAATGAAGAGGATTATGTCACTGAAAAATTTTTCCAATCTCTTGTAGCAGGAACAATTCCGGTGGTGGTTGGGGCTCCAAATATAGAAGATTTTGCTCCTTCTCATGGTTCAATTTTACATATCAAGGAGCCTTCAGATGTTGAGCCAGTTGCAAAAGCCATGAAATATCTTTCAGAAAATCCAGATGTATATAACCAGTCATTGAGATGGAAATATGAAGGTCCATCTGATTCATTCAAGGCCCTAGTGGATATGGCAGCAGTTCACTCATCATGCCGGCTTTGCATTCACCTGGCGACATCCATTCGGGATAAAGAAGAAAAGAGGCCTGGCTTTAAGAAACGGCCTTGCAAGTGTACGAGAGGCTCACAGACCGTGTACCATTTATACGTCAGAGAAAGAGGGAGGCTTGATTTTGAGTCTATTTTCTTAAGGTCTGGAAATTTGACGTTAGCGGCTCTTGAGTCGGCGGTGTTCGAAAAGTTCAGTTCTAAAAAGCATATTCCGATATGGAAGGAAGAAAGACCGGAAAGCATAAGAGGCGGGGATGAACTGAAAGTGTATAGAATATATCCTCTTGGTTTGACTCAAAGACAGGCATTGTATAGCTTCAGACTAAAAGGGGAATCTGATCTGAGAAATCAGGTGGAGAGCCATCCCTGTGCAAAGCTTGAAGTCATCTTTGTTTAG 1038 42.77 MESAQYYSENNIAIARRKGYSIIMTTSLSSDVPVGYFSWAEYDIMAPVQPKTKTSLAAAFISNCGARNFRLEALEALEKLKIKIDSYGGCHRNRDGRVNKVEALKRYKFSLAFENSNEEDYVTEKFFQSLVAGTIPVVVGAPNIEDFAPSHGSILHIKEPSDVEPVAKAMKYLSENPDVYNQSLRWKYEGPSDSFKALVDMAAVHSSCRLCIHLATSIRDKEEKRPGFKKRPCKCTRGSQTVYHLYVRERGRLDFESIFLRSGNLTLAALESAVFEKFSSKKHIPIWKEERPESIRGGDELKVYRIYPLGLTQRQALYSFRLKGESDLRNQVESHPCAKLEVIFV 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13460321 13463053 + Bda029405.1 Bda08g00841 11697

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00841 345 Gene3D - 6 194 IPR038577 -
Bda08g00841 345 Pfam Glycosyltransferase family 10 (fucosyltransferase) C-term 51 219 IPR001503 GO:0006486|GO:0008417|GO:0016020
Bda08g00841 345 PANTHER BNAA06G03030D PROTEIN 1 323 - -
Bda08g00841 345 PANTHER ALPHA- 1,3 -FUCOSYLTRANSFERASE 1 323 IPR001503 GO:0006486|GO:0008417|GO:0016020
Bda08g00841 345 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 17 220 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00841 K00753 E2.4.1.214; glycoprotein 3-alpha-L-fucosyltransferase [EC:2.4.1.214] - vvi:100255469 590.497
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00841 Bda-Chr8:13460321 Bda08g00885 Bda-Chr8:15959542 0 dispersed
Bda08g00832 Bda-Chr8:13119921 Bda08g00841 Bda-Chr8:13460321 0 proximal
Bda13g01450 Bda-Chr13:37203825 Bda08g00841 Bda-Chr8:13460321 2.97E-17 transposed
Bda08g00786 Bda-Chr8:10643739 Bda08g00841 Bda-Chr8:13460321 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda07g01477 . 4 471 Xyloglucan Fucosyltransferase1 AT1G14080 56.8 3.6e-156 548.5
Bda07g01477 . 2 472 Xyloglucan Fucosyltransferase1 AT1G14100 56.3 4.1e-157 551.6
Bda07g01477 . 4 475 Xyloglucan Fucosyltransferase1 AT1G14110 53.3 1.6e-139 493.0
Bda08g00821 . 1 512 Xyloglucan Fucosyltransferase1 AT1G49710 65.1 1.5e-191 666.0
Bda08g00885 BCT 1 530 Xyloglucan Fucosyltransferase1 AT1G49710 63.1 4.0e-189 657.9
Bda06g01072 BCT 1 509 Xyloglucan Fucosyltransferase1 AT1G49710 64.1 6.8e-189 657.1
Bda08g00786 . 1 530 Xyloglucan Fucosyltransferase1 AT1G49710 62.9 2.0e-188 655.6
Bda08g00868 . 1 546 Xyloglucan Fucosyltransferase1 AT1G49710 60.7 1.9e-186 649.0
Bda08g00832 . 5 384 Xyloglucan Fucosyltransferase1 AT1G49710 69.7 8.5e-155 543.9
Bda08g00841 . 1 345 Xyloglucan Fucosyltransferase1 AT1G49710 74.0 3.0e-152 535.4
Bda13g01450 . 1 335 Xyloglucan Fucosyltransferase1 AT1G71990 57.0 1.5e-122 436.4
Bda07g01477 . 6 471 Xyloglucan Fucosyltransferase1 AT2G03210 61.3 5.1e-177 617.8
Bda07g01477 . 1 469 Xyloglucan Fucosyltransferase1 AT2G03220 67.4 2.2e-193 672.2
Bda07g00197 . 5 396 Xyloglucan Fucosyltransferase1 AT2G03220 53.5 2.7e-122 436.0
Bda07g01477 . 4 471 Xyloglucan Fucosyltransferase1 AT2G15350 52.0 2.1e-145 512.7
Bda07g01477 . 4 471 Xyloglucan Fucosyltransferase1 AT2G15370 52.5 1.7e-142 503.1
Bda07g01477 . 4 471 Xyloglucan Fucosyltransferase1 AT2G15390 53.7 5.0e-150 528.1
Bda08g00821 . 1 512 Xyloglucan Fucosyltransferase1 AT3G19280 64.4 3.5e-190 661.4
Bda08g00885 BCT 1 530 Xyloglucan Fucosyltransferase1 AT3G19280 62.6 4.3e-188 654.4
Bda06g01072 BCT 1 509 Xyloglucan Fucosyltransferase1 AT3G19280 63.7 2.2e-187 652.1
Bda08g00786 . 1 530 Xyloglucan Fucosyltransferase1 AT3G19280 62.5 2.2e-187 652.1
Bda08g00868 . 1 546 Xyloglucan Fucosyltransferase1 AT3G19280 60.3 9.0e-186 646.7
Bda08g00832 . 1 384 Xyloglucan Fucosyltransferase1 AT3G19280 71.0 4.2e-159 558.1
Bda08g00841 . 1 345 Xyloglucan Fucosyltransferase1 AT3G19280 75.9 7.5e-156 547.4
Bda07g01477 . 6 471 Xyloglucan Fucosyltransferase1 AT2G03210 61.3 5.1e-177 617.8
Bda07g01477 . 1 469 Xyloglucan Fucosyltransferase1 AT2G03220 67.4 2.2e-193 672.2
Bda07g00197 . 5 396 Xyloglucan Fucosyltransferase1 AT2G03220 53.5 2.7e-122 436.0
Bda07g01477 . 6 471 Xyloglucan Fucosyltransferase1 AT2G03210 61.3 5.1e-177 617.8
Bda07g01477 . 4 471 Xyloglucan Fucosyltransferase1 AT2G15390 53.7 5.0e-150 528.1
Bda07g01477 . 4 471 Xyloglucan Fucosyltransferase1 AT2G15370 52.5 1.7e-142 503.1
Bda07g01477 . 4 471 Xyloglucan Fucosyltransferase1 AT1G14080 56.8 3.6e-156 548.5
Bda07g01477 . 2 472 Xyloglucan Fucosyltransferase1 AT1G14100 56.3 4.1e-157 551.6
Bda07g01477 . 4 475 Xyloglucan Fucosyltransferase1 AT1G14110 53.3 1.6e-139 493.0
Bda07g01477 . 4 471 Xyloglucan Fucosyltransferase1 AT2G15350 52.0 2.1e-145 512.7
Bda08g00821 . 1 512 Xyloglucan Fucosyltransferase1 AT3G19280 64.4 3.5e-190 661.4
Bda08g00885 BCT 1 530 Xyloglucan Fucosyltransferase1 AT3G19280 62.6 4.3e-188 654.4
Bda06g01072 BCT 1 509 Xyloglucan Fucosyltransferase1 AT3G19280 63.7 2.2e-187 652.1
Bda08g00786 . 1 530 Xyloglucan Fucosyltransferase1 AT3G19280 62.5 2.2e-187 652.1
Bda08g00868 . 1 546 Xyloglucan Fucosyltransferase1 AT3G19280 60.3 9.0e-186 646.7
Bda08g00832 . 1 384 Xyloglucan Fucosyltransferase1 AT3G19280 71.0 4.2e-159 558.1
Bda08g00841 . 1 345 Xyloglucan Fucosyltransferase1 AT3G19280 75.9 7.5e-156 547.4
Bda08g00821 . 1 512 Xyloglucan Fucosyltransferase1 AT1G49710 65.1 1.5e-191 666.0
Bda08g00885 BCT 1 530 Xyloglucan Fucosyltransferase1 AT1G49710 63.1 4.0e-189 657.9
Bda06g01072 BCT 1 509 Xyloglucan Fucosyltransferase1 AT1G49710 64.1 6.8e-189 657.1
Bda08g00786 . 1 530 Xyloglucan Fucosyltransferase1 AT1G49710 62.9 2.0e-188 655.6
Bda08g00868 . 1 546 Xyloglucan Fucosyltransferase1 AT1G49710 60.7 1.9e-186 649.0
Bda08g00832 . 5 384 Xyloglucan Fucosyltransferase1 AT1G49710 69.7 8.5e-155 543.9
Bda08g00841 . 1 345 Xyloglucan Fucosyltransferase1 AT1G49710 74.0 3.0e-152 535.4
Bda13g01450 . 1 335 Xyloglucan Fucosyltransferase1 AT1G71990 57.0 1.5e-122 436.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001699 7 4 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 4 1 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00841 Bda_Chr08 FPKM 13.250905 13.862848 7.056506 8.492565 7.818568 6.635722 7.447323 9.961232 10.511377