Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00853 ATGTTTGGTGGAAGTGTGTATTGGGGGAGGAGGAAAGCTGACCGCCGTGGAGGAATTGTTGTTCTTTTTGCTTGGGTTTCACTTCAGGATCGGCACTTGAGCAATTATGTGGATTTGTATTCGTCGCTCGGTTGGAATTCCCTCGATTGCCGAGCAGATTTCTCAATGCGTCAGTTTACTTCTTTCACTTTAGCCTTTCTTTGGTTAGAACGTCAGGTGTCCTCAGAGTTAAGGCAGAGGCCCCGTCCGCTAGTTTTTGTAACATTTTCTGCTGCTTCAAAGGCTTGTATGTACAAGGTTTTTCAGGTTGATTTCAATTCAAATGAATATCGCATCGTCAAAATTTGCATTTCCGGACACATCTACGATTCTAGTCCAGTTGAGTTTACCAGTGACCTGGGTGCACGCTTTTCTCTTCACCCAACAATTTTAAAAATGGTTGGATCTTCCAAACTTGTTTCCTGGATTGCAAAAGGTGTTGCTTCTGGTCTCGATACGTTATATGTTACCAGACTTGATTTGCTACATTCTGAATATTGGAAAACTCTTAACTCCTCTGTGAGTTTTGGTGCTCCATTTCTCTTTTTATGCTCTGAGAAGGATAGCCTTGCACCATATCACATTATTCGAAGTTTCAATCAACGAATTCAAGAACTTGGTGCGGATGCTGAGGTTGTGGAATTCAGTTCATCCCCGCATGTCGGTCATTATAAGACTTATCCTATTCAGTATAAAGCTGCCGTGAGTTGTTTGCTTGAAAAGGCTGCTTTCGTCTATTCAGAAAGAATCTCTCAACTCAAGGGAGAAATCCACAATGAGATGTCAGAGCTGATATGCGACCTTCAAAATGCTGCCGTTAACTCGAATCAGAGCCTCGCAAGAGTTGCACTAGGGCCTGGTGACCATTTTTTCTTGCCAAGTTCCGAAGAGTCCAAAAATGATGAAAACTCTCCATCCTTCAAACACAAGCCGAAAGAAAGATCAAACTATGTTTCCTGTTCAAGTCCTCCAGGCATCAGTGCACGCAGCGTACTTGGCGAAATACTCTTCGATGTTTGTGTTCCGAAAAATGTCGAAGGTTGGGACATTAAATTTTGTGGCTCTTTAAACGGGCAGCCACTTGCTTCTGCTCACAGGCATTCCCCTAAACGCAACATTAAAGGCGTTCGACGATCGAGATTATAG 1185 43.12 MFGGSVYWGRRKADRRGGIVVLFAWVSLQDRHLSNYVDLYSSLGWNSLDCRADFSMRQFTSFTLAFLWLERQVSSELRQRPRPLVFVTFSAASKACMYKVFQVDFNSNEYRIVKICISGHIYDSSPVEFTSDLGARFSLHPTILKMVGSSKLVSWIAKGVASGLDTLYVTRLDLLHSEYWKTLNSSVSFGAPFLFLCSEKDSLAPYHIIRSFNQRIQELGADAEVVEFSSSPHVGHYKTYPIQYKAAVSCLLEKAAFVYSERISQLKGEIHNEMSELICDLQNAAVNSNQSLARVALGPGDHFFLPSSEESKNDENSPSFKHKPKERSNYVSCSSPPGISARSVLGEILFDVCVPKNVEGWDIKFCGSLNGQPLASAHRHSPKRNIKGVRRSRL 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14240862 14243336 + Bda029422.1 Bda08g00853 11709

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00853 394 MobiDBLite consensus disorder prediction 314 328 - -
Bda08g00853 394 MobiDBLite consensus disorder prediction 305 332 - -
Bda08g00853 394 PANTHER DUF829 DOMAIN PROTEIN 3 326 - -
Bda08g00853 394 SUPERFAMILY alpha/beta-Hydrolases 190 241 IPR029058 -
Bda08g00853 394 Pfam Eukaryotic protein of unknown function (DUF829) 116 361 IPR008547 -
Bda08g00853 394 PANTHER UNCHARACTERIZED 3 326 IPR008547 -
Bda08g00853 394 MobiDBLite consensus disorder prediction 380 394 - -
Bda08g00853 394 MobiDBLite consensus disorder prediction 374 394 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00853 - - - mdm:103436514 487.263
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g01054 Bda08g00853 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00825 Bda-Chr8:12382552 Bda08g00853 Bda-Chr8:14240862 0 dispersed
Bda08g00839 Bda-Chr8:13401413 Bda08g00853 Bda-Chr8:14240862 0 dispersed
Bda08g00853 Bda-Chr8:14240862 Bda08g00889 Bda-Chr8:16044261 0 dispersed
Bda06g01054 Bda-Chr6:37436023 Bda08g00853 Bda-Chr8:14240862 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g434 Blo02g00836 Blo15g00736 Bda06g01054 Bda08g00853 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1106 . . . . . . . . . . . . . . . . . . . . Cpe14g00300 Cpe01g00451 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004102 6 1 2 0 0 0 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 6 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00853 Bda_Chr08 FPKM 33.264717 33.315643 24.334852 23.279587 54.192959 55.858154 54.433605 25.899063 23.316801