Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00855 ATGTGGGAAGACGCAGATGATGGATTAGGAAAGAGTCTTCAACCTTCGAGGCAGGACTTGATGGAGGAGTTTGAGGAGGCCGCGAATGGAGGAGTACAAAGCTTGGCGCTAGGGGCATTAGACAATAGCTTTTTGGTGAACGATTCTGGTGTTCAGGTCTACAAGAATATCAGCCATGGGATTCACGGAAAGGGAGTTTGTGTCAAATTCGACAGTGGAAATTCTGTTATTGGTTCGAAATCAACTCCAAAAAAGGCTCTTCTTATGAGGGCAGAAACAAATATGCTTCTCATGAGTCCATTGAAAGAGGGAAAGCCCCATTCAACAGGGCTCGAACAGCTTGACATCGAGACGGGGAAGATCGTTTCACAATGGAAGTTTGGAAAAGATGGGACTGAAATTACGGTGACTGAAAACGGAAAGCAAGAGCGGCATTTGGTGGCGACGGTGGGGAAGTTCAGCGTGATATGGGATTTCCAGCGTGTGAAGAACAGCGGGCATGAATGCTACCGGAATCAGCAAGGGCTAAAGAGCTGTTACTGTTACAAGATTGTTTTGAAGGAGGAGTCAATTATTCAGAGTCGGTTCATGCATGACAAATTTGCCGTCTCCGATTCCCCAGAAGCCCCGTTGGTGGTCGCTACTCCATTGAAAGTCAGCTCCATCAGCCTTCCCGGCAAGCGCTGA 687 47.74 MWEDADDGLGKSLQPSRQDLMEEFEEAANGGVQSLALGALDNSFLVNDSGVQVYKNISHGIHGKGVCVKFDSGNSVIGSKSTPKKALLMRAETNMLLMSPLKEGKPHSTGLEQLDIETGKIVSQWKFGKDGTEITVTENGKQERHLVATVGKFSVIWDFQRVKNSGHECYRNQQGLKSCYCYKIVLKEESIIQSRFMHDKFAVSDSPEAPLVVATPLKVSSISLPGKR 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14387251 14388729 - Bda029429.1 Bda08g00855 11711

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00855 228 PANTHER DEM PROTEIN 136 228 - -
Bda08g00855 228 PANTHER DEM PROTEIN 1 137 - -
Bda08g00855 228 Pfam VID27 C-terminal WD40-like domain 35 131 IPR013863 -
Bda08g00855 228 PANTHER VACUOLAR IMPORT AND DEGRADATION PROTEIN 27 136 228 IPR040458 -
Bda08g00855 228 PANTHER VACUOLAR IMPORT AND DEGRADATION PROTEIN 27 1 137 IPR040458 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00855 - - - zju:107410094 219.935
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g01066 Bda08g00855 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00823 Bda-Chr8:12348331 Bda08g00855 Bda-Chr8:14387251 3.20E-57 dispersed
Bda08g00855 Bda-Chr8:14387251 Bda08g00887 Bda-Chr8:16013613 2.14E-66 dispersed
Bda06g01066 Bda-Chr6:37818958 Bda08g00855 Bda-Chr8:14387251 1.53E-56 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g419 Blo02g00833 Blo15g00741 Bda06g01066 Bda08g00855 Bpe07g00384 . Bma05g00517 Bma12g00456 . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1094 Cone8ag1136 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0024715 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00855 Bda_Chr08 FPKM 21.949703 25.738501 0.871605 1.072046 2.550988 2.169289 2.363658 0.0 0.212353