Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00884 TTAACCATGGAGTTCTCTGGAACTTCATTTCTGCTGGGTTTCATTTTATTTCTTGCAATGCTTCTACCTCAGATAATGGCGGGCTGCCCTTTGGATTTGATTCCATCAAATTTTACTCTAGTGGTCTCTATGTGCAAAAATAATGGTGACAGAGGAAAGTGCTGTCGCTATATTAATGCCGTTATTGCAGTTTCTGTTGCTCATTATGCAAATGAAACAAACAATCTTGGGGTTCCTACAGATTTTTCTGAATCCTGCCTTGAGTCTATTTTGCACACCATGGTGCTATATGGAGTTCCACAAAACGCGACAGCATTTTGTGGATTTGGAATGAAGATTTCAGTCAACTACGAGTGCAAGGGACGAACAACTATCACGCAAATGCTGCAATCTGCAGATTTTCCCGATGTTATTGACAATTGCAAAATGCCGTTGTCCGAAGACACCAAGTGTAGATCGTGTATAAATTCTTCCATGGTTTTCCTTCGTCATATTGTTGGAATTGATGATAACATAACATTGAGTACATGTCGTGATGCCACGTTTGTCTCGCTTGTTAGTCAAGTAGATCCTGATTCAGCTGCTGAGTTTGCCAACTGTTTCTTTGGAGTTCAAGGGCTAAACATGCATACAGAGCCGTCCCCGAATTTGGTGACCCCAGGTGTTTCTCCAAGTCCTTTTGATGCTGCAAGCCCAAGCCAACAATTGTTAGGCATACCCATTTCCCAGAAGCACCATTCCTACCATCTAACTCTAGTCCCTGGCATCGGCATTGGAGTTACAGCCTTTTCTGTTCTGATGCTGCTGGTCTTGATCGTGCTGGTACGTAGGAAATGCAGACAATTAGATGATTCTGAGAATGCAGATTTCACATCGTCAAAAACCTTCTCTGTTCCTCGAACAGTCCGAAAAATTCAAGAAGGTAATTTTATGTTTCAAAAGTTCAGCTACAAGGACATAAAGAAAGCTACAGACGATTTTAGAAATGAAATTAGACGTGGAGGATTTGGGACTACATACAAGGCTCAGTTTGATAATGGTTTAGTGGCAGCAGTGAAGAGGATAAACAAAGTGTTGGGGCAGAGGGAAAAGGACTTCTGTAGAGAGATAGAGCTTCTTGCTAGATTACATCATCGTCACCTTGTTGCTCTAAGAGGCTTTTCCATTGGAAAACATGAGAGGTTTCTCATTTATGAGTACATGGCAAATGGAAGCTTGACTGATCATCTTCACTCGATCAGTACAAATCCATTAAGTTGGCAGACGAGAATACAAATCGCCATAGACGTGGCCAATGCTCTGGAGTACCTGCATTTTTATTGCGATTCTCCTCTGTGCCATAGAGACATCAAGTCCAGTAACATCTTACTTGATGAATATTTTGTTGCCAAGATTGCAGATTTTGGCCTTGCTCATGTTTCAAAAGATGGTTCTGTTTGCTTTGAACCAGTAAATACTGATGTCCAGGGAACAGCTGGTTACATTGATCCTGAGTATGTTGTCACTCAAGAACTTACCGAGAAAAGTGATGTATACAGCTATGGCGTTCTACTCTTGGAGATAGTCACCGGAAGACTACCTATACTAGACGGCAAAAGTTTGGTAGAATGGTCACACTTTTACATGCAATCGGAAACAACTCTACCCGAACTAGTGGATCCGAGAATCAAGGATTCCTTCGACTTAGAACAGCTTCATGCAGTTGTTTCGATAGTAAAATTGTGTACGCATCGAGAAGGAAGGGACAGGCCATCGATTAAGCAGGTCATTCGGCTTTTGTACGATAGTTCAGATCCAATGCAAAGTGGGTTTATCGACATAATGGACTATGAAGACTATGAGCATGTGGAAAGAAGAGAGAGAACTAGTAGAGGAAAAATGCATAGTGGAGATATAAGATGCCTCGCTTCGTCTTCTAGTACTTCAAGATCTCATTGTAGTAGAAGCTTTCTGCTTGAAACCAGCTCTTCTCATTCCCCTTCCTAA 1986 41.64 LTMEFSGTSFLLGFILFLAMLLPQIMAGCPLDLIPSNFTLVVSMCKNNGDRGKCCRYINAVIAVSVAHYANETNNLGVPTDFSESCLESILHTMVLYGVPQNATAFCGFGMKISVNYECKGRTTITQMLQSADFPDVIDNCKMPLSEDTKCRSCINSSMVFLRHIVGIDDNITLSTCRDATFVSLVSQVDPDSAAEFANCFFGVQGLNMHTEPSPNLVTPGVSPSPFDAASPSQQLLGIPISQKHHSYHLTLVPGIGIGVTAFSVLMLLVLIVLVRRKCRQLDDSENADFTSSKTFSVPRTVRKIQEGNFMFQKFSYKDIKKATDDFRNEIRRGGFGTTYKAQFDNGLVAAVKRINKVLGQREKDFCREIELLARLHHRHLVALRGFSIGKHERFLIYEYMANGSLTDHLHSISTNPLSWQTRIQIAIDVANALEYLHFYCDSPLCHRDIKSSNILLDEYFVAKIADFGLAHVSKDGSVCFEPVNTDVQGTAGYIDPEYVVTQELTEKSDVYSYGVLLLEIVTGRLPILDGKSLVEWSHFYMQSETTLPELVDPRIKDSFDLEQLHAVVSIVKLCTHREGRDRPSIKQVIRLLYDSSDPMQSGFIDIMDYEDYEHVERRERTSRGKMHSGDIRCLASSSSTSRSHCSRSFLLETSSSHSPS 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15954932 15959004 + Bda029491.1 Bda08g00884 11740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00884 661 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
Bda08g00884 661 SMART serkin_6 325 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda08g00884 661 PANTHER BNAC06G02630D PROTEIN 9 661 - -
Bda08g00884 661 PANTHER OS01G0750732 PROTEIN 9 661 - -
Bda08g00884 661 Gene3D Transferase(Phosphotransferase) domain 1 401 607 - -
Bda08g00884 661 Pfam SPARK 28 171 IPR043891 -
Bda08g00884 661 Pfam Protein kinase domain 330 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda08g00884 661 ProSiteProfiles Protein kinase domain profile. 325 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda08g00884 661 Gene3D Phosphorylase Kinase; domain 1 289 400 - -
Bda08g00884 661 CDD STKc_IRAK 331 593 - -
Bda08g00884 661 SUPERFAMILY Protein kinase-like (PK-like) 307 594 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00707 Bda-Chr7:8342150 Bda08g00884 Bda-Chr8:15954932 1.90E-51 dispersed
Bda08g00833 Bda-Chr8:13123351 Bda08g00884 Bda-Chr8:15954932 0 dispersed
Bda08g00884 Bda-Chr8:15954932 Bda03g01735 Bda-Chr3:56779740 1.92E-65 dispersed
Bda08g00785 Bda-Chr8:10639976 Bda08g00884 Bda-Chr8:15954932 0 wgd
Bda08g00884 Bda-Chr8:15954932 Bda08g00923 Bda-Chr8:16984613 7.81E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69772 PF00069 Pkinase 2.20E-44 CL0016 Bda PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00884 - - qsu:112015064 880.552