Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00904 ATGAGTTCCAGTGAAGGAATATGCTTCACAGAAGAGCAGGAAGCTCTGGTGGTGAAGTCATGGAATGTGATGAAGAAGAGCGCTGCTGAATTGGGTCTTAAATTGTTCATCAAGATATTTGAAATCGCGCCGTCAGCCAAGAAGATGTTCTCATTCTTGAAGGACTCGAACGTTCCTCTGGAGCAGAACAGAAAACTCAAGACACACGCCTTCTCTGTCTTCACCATGACGTGTGAATCAGCAGTTCAACTGAGGAAATCTGGAAAGGTGACGGTGAGGGAGTCGAGCTTGAAGAAGCTGGGAACAGTCCACTCCAGTTACGGGGTGGCTGACGAACATTTCGAGGTGACGAGATTTGCGCTGCTGGAAATTATAAAGGAGACAGTACCAGAAATGTGGTCCGCGGAGATGAAGAGTGCGTGGGGAGAGGCATACGATCAGCTGGTTTCTGCCATTAAATCAGAGATGAAGTAA 474 47.47 MSSSEGICFTEEQEALVVKSWNVMKKSAAELGLKLFIKIFEIAPSAKKMFSFLKDSNVPLEQNRKLKTHAFSVFTMTCESAVQLRKSGKVTVRESSLKKLGTVHSSYGVADEHFEVTRFALLEIIKETVPEMWSAEMKSAWGEAYDQLVSAIKSEMK 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16489820 16490508 + Bda029523.1 Bda08g00904 11760

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00904 157 CDD class1_nsHb-like 9 157 - -
Bda08g00904 157 ProSiteProfiles Globin family profile. 9 157 IPR000971 GO:0020037
Bda08g00904 157 Pfam Globin 34 152 IPR000971 GO:0020037
Bda08g00904 157 PANTHER HEMOGLOBIN 1, GLB1,NSHB1,ATGLB1,HB1 5 157 - -
Bda08g00904 157 Gene3D Globins 7 155 IPR012292 GO:0019825|GO:0020037
Bda08g00904 157 SUPERFAMILY Globin-like 7 157 IPR009050 -
Bda08g00904 157 PRINTS Plant globin signature 10 27 - -
Bda08g00904 157 PRINTS Plant globin signature 35 55 - -
Bda08g00904 157 PRINTS Plant globin signature 63 91 - -
Bda08g00904 157 PRINTS Plant globin signature 128 154 - -
Bda08g00904 157 PANTHER LEGHEMOGLOBIN-RELATED 5 157 IPR001032 GO:0019825|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00904 - - - cpap:110813708 258.455
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda14g00373 Bda-Chr14:2715931 Bda08g00904 Bda-Chr8:16489820 2.12E-53 transposed
Bda08g00904 Bda-Chr8:16489820 Bda08g00916 Bda-Chr8:16816802 5.31E-95 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g540 . . . Bda08g00904 . . Bma05g00503 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007931 2 0 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00904 Bda_Chr08 FPKM 4.725333 8.055003 6.961249 7.961179 6.668279 0.0 7.684098 11.20168 12.698139