Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00906 ATGCTTCCATCGCCATTCGCTTTCTTTTTCTCTTCTGTGCGCACTGATGAAGCTCCATCATCGTCAAAACCGTCAATCTCAGCTGTCGTTTTAGCCCTCACCCACCATCGTTCGAAATCTCGCTGGAGGTACCTCCGGCATCTTTGCTCCAACGGATTCGAACCCGATGAGTTTTCGCAAATTACCCTTCAGCTTAGGAACAATCCTCATCTTGTTCTCAGTTTCTTTCGCTGGACCCAGTCCAAGTCTCTTTGCCACCATAACCTTTCCTCTTACTCGACCGTCATTCATATTCTTGCCCGGGGCCGGCTCAGATTTCACGCAGTTAATCTTATTCAGGCGGCTCTTCAGGCAGCGACGTTGGAAAATGATGATTCTGAAAGTAGGCTTTGTTCGAACTCTCTGAAGGTGTTTGAGGCGCTCGTCAAAACTTACAGGCAATGTGATTCTGCTCCTTTTGTTTTTGATTTGCTTATAAAAGCTCTTCTAGACTCGAAAAAGGTCGACGCATCGATTCAATTGGTAAGAATGTTAAGGTCTCGCGGGATTTCCCCAAAAGTTGATACTTTGAATTCATTGATTTTGTTGGTTTCTCAGTGTCAAGGTTCAATTGCAGGCTACGGTGTGTATAGAGAATTTTTCGGTGAAATCAGAAAGGGGAATACGAAAAGGATTTTGGAAGTTAATCCAAATGTGCATACTTTCAATGCATTAATGATTAGCTTTTACCAAGATGGTTTGGTTGAAAATGTGGAGGAGATTTGGGAACAATTTGAGAAATCAAAGTTAGTTCCAAATAAATATAGCTTTAGCATTTGGCTGGCAGCACTTTGTGAGGCGAAAAAAATGGATGCAGTGGAGAAGTTGTGGGAGGAAATGAAACATAACAAAGTGACGCCAGATGTTGTCTCTTACAACACTGTAATTGGTGGGTATTGCAAAATCGGAGATCTTAAAAGGGCTGATGAGTTTTTCAAAGAAATGGAGTTGATTGGAATCGACACTACTTGCACCACCTATGAACATCTTGTATGTGGCTATTCTATGATCGGAAATGTCGATTCTGCCATGCTCGCTTATAACGATATGCACAGAAAGCATTTTAGGCCTAGTGCTTTTGTAATGGAAGAGCTGATAAGAGCGCTCGTGGCTAAGCATAGAGTTTCAGAATCCTTGGAGATTTTGAGGAATGAAATGGCAGATAGTAATATTTCTCCAACTGGGAAGAGTTATGAGCTTTTAATAGAAGGTATGTGTAAAGAGGGGAAAATCGAAGAAGCTTTCAAACTTCAAGAAGAAATGGTGGGGAAAGGCTTTCAATCGAATGTCGAGATCTACAATGCTTTCATCACCGGCCATATGAGACAAGGAAATAAGGAAATGGCAGAAAGGATGAGAAATGAAATGCTTGAGATTCACTTCAATGAAAAATAG 1434 41.42 MLPSPFAFFFSSVRTDEAPSSSKPSISAVVLALTHHRSKSRWRYLRHLCSNGFEPDEFSQITLQLRNNPHLVLSFFRWTQSKSLCHHNLSSYSTVIHILARGRLRFHAVNLIQAALQAATLENDDSESRLCSNSLKVFEALVKTYRQCDSAPFVFDLLIKALLDSKKVDASIQLVRMLRSRGISPKVDTLNSLILLVSQCQGSIAGYGVYREFFGEIRKGNTKRILEVNPNVHTFNALMISFYQDGLVENVEEIWEQFEKSKLVPNKYSFSIWLAALCEAKKMDAVEKLWEEMKHNKVTPDVVSYNTVIGGYCKIGDLKRADEFFKEMELIGIDTTCTTYEHLVCGYSMIGNVDSAMLAYNDMHRKHFRPSAFVMEELIRALVAKHRVSESLEILRNEMADSNISPTGKSYELLIEGMCKEGKIEEAFKLQEEMVGKGFQSNVEIYNAFITGHMRQGNKEMAERMRNEMLEIHFNEK 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16506914 16508347 + Bda029526.1 Bda08g00906 11762

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00906 477 Pfam PPR repeat 298 329 IPR002885 -
Bda08g00906 477 Pfam PPR repeat 404 435 IPR002885 -
Bda08g00906 477 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 301 335 IPR002885 -
Bda08g00906 477 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 266 300 IPR002885 -
Bda08g00906 477 TIGRFAM PPR: pentatricopeptide repeat domain 233 266 IPR002885 -
Bda08g00906 477 TIGRFAM PPR: pentatricopeptide repeat domain 303 329 IPR002885 -
Bda08g00906 477 TIGRFAM PPR: pentatricopeptide repeat domain 410 442 IPR002885 -
Bda08g00906 477 TIGRFAM PPR: pentatricopeptide repeat domain 268 302 IPR002885 -
Bda08g00906 477 TIGRFAM PPR: pentatricopeptide repeat domain 339 371 IPR002885 -
Bda08g00906 477 Gene3D Tetratricopeptide repeat domain 365 475 IPR011990 GO:0005515
Bda08g00906 477 Gene3D Tetratricopeptide repeat domain 59 201 IPR011990 GO:0005515
Bda08g00906 477 Gene3D Tetratricopeptide repeat domain 209 364 IPR011990 GO:0005515
Bda08g00906 477 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 336 370 IPR002885 -
Bda08g00906 477 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 151 185 IPR002885 -
Bda08g00906 477 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Bda08g00906 477 Pfam PPR repeat 339 367 IPR002885 -
Bda08g00906 477 Pfam PPR repeat 445 471 IPR002885 -
Bda08g00906 477 Pfam PPR repeat family 230 278 IPR002885 -
Bda08g00906 477 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 8 474 - -
Bda08g00906 477 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 231 265 IPR002885 -
Bda08g00906 477 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 8 474 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00906 - - - bhj:120088417 560.451
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00906 Bda-Chr8:16506914 Bda15g00029 Bda-Chr15:1691691 2.53E-34 dispersed
Bda14g00531 Bda-Chr14:3827942 Bda08g00906 Bda-Chr8:16506914 1.12E-07 wgd
Bda08g00906 Bda-Chr8:16506914 Bda08g00914 Bda-Chr8:16811599 5.99E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g536 Blo02g00788 . . Bda08g00906 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1132 Cone10ag1142 Lsi10g00648 . . . . . . . . . . . . . . . . . . . . Bhi10g02041 . . . . . . . . . . . . . . . . Cme11g00226
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012888 2 1 1 1 0 0 1 1 0 1 1 0 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00906 Bda_Chr08 FPKM 2.214559 1.943366 1.627945 1.803416 10.918946 8.505766 11.106458 2.12301 3.362026