Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00933 ATGAATACTGCGCCGCCGGAAATGTTGCACTGTTTCACTGCCAATGGGAGCTCTACGGACATGACTGTCCTGGAGAGACAGAGTGGTCGCCGAAAATGGGAAGAAGAACGGCTACTAGAGCCGGAAAAGAGTCTGAGCTCCTATGGTTGTTTTAATGAGTTTAGGAGCCTATTTTCTTCTCCGATACCGGCGACCCAGGTCCAAAGCTTTCAGGGTTTGATGGGCAGAGCTGATTCAGCGCTGGGAGAGGTAGTAGTAGGCTCGTTAAAGCCCGACCCTGGCGTGGATATCGTCTGGCCGGAGTTGGAGATGCCCAGTATGGAGTTCGGATCGTCTGGTATGGTGAAAGGGAGTACTGAGCTTGAAGAGAGTTACTCTGTTTCTAGAGCTTCCAGCTGCAAACCTGCAATGGTGGCTCTTGCAGCCGGAGAGGTCAAACGTAAAGAATTAACGGAGAAGATGAACTCTTTCGCTGGAAGAGATAGCTTCAAGAAGAGGAAAGCTGAAAAGATACAAAATGCCTTGGTTTCTTCTGGAGAAGACATCAGAGAGAAGAAAATCAAATCCAGCGCAGAAGAAGCAGAATCAAAGATCACAGACCAAAACACCATTAAAACCAACAACAACAACACCACAGAAACCTCAGCCGACACTTCCAAAGAAAATAATTCAAAAGCTTCGGAGGTTCAAAAGCCAGACTACATCCATGTTCGAGCACGCCGAGGCCAAGCGACAGACAGCCACAGCCTCGCTGAAAGAGTAAGGCGAGAGAAGATCAGCGAGAGAATGAGATATTTGCAGGATTTAGTCCCAGGATGCAACAAAATCACAGGCAAAGCTGGAATGTTAGACGAAATCATCAACTACGTTCAATCTCTTCAACGCCAAGTAGAGTTTCTATCGATGAAATTGGCGACCTTGAACCCCAGGCTTGACTTCAATGTTGATGAACTCTTTGCGAAAGAGGTATTTCAGTCTTCCCAATCGAACTTTCCGAATGTAGGAGGAATTTCATCAGCAGCAAACAATTCAGCTTACACACAGTTCACTCCATTACCACAAGTGCTTCCCTGTTCTGCATTGGAAATGGCCATAACTCCCTCCGAAGTCGGCATTCGTCGGACGAGTAGCGCACCAGTTTCGTTTATCCCCGAAAGATTCATAGACTCTTCGTGCTTCGCAGGAAATCAGCCTCCTTCAACATGGAATGCGGATTTACAAAACTTTTACAACATTGGATTTGATCAAGGAAGATCAACAGCTTTTCCATCTAACCCATATACAGGTTCCATGGAAGATAGTAATCTAAAAATGGAGATGTGA 1323 46.11 MNTAPPEMLHCFTANGSSTDMTVLERQSGRRKWEEERLLEPEKSLSSYGCFNEFRSLFSSPIPATQVQSFQGLMGRADSALGEVVVGSLKPDPGVDIVWPELEMPSMEFGSSGMVKGSTELEESYSVSRASSCKPAMVALAAGEVKRKELTEKMNSFAGRDSFKKRKAEKIQNALVSSGEDIREKKIKSSAEEAESKITDQNTIKTNNNNTTETSADTSKENNSKASEVQKPDYIHVRARRGQATDSHSLAERVRREKISERMRYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLATLNPRLDFNVDELFAKEVFQSSQSNFPNVGGISSAANNSAYTQFTPLPQVLPCSALEMAITPSEVGIRRTSSAPVSFIPERFIDSSCFAGNQPPSTWNADLQNFYNIGFDQGRSTAFPSNPYTGSMEDSNLKMEM 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17209090 17210843 + Bda034030 Bda08g00933 11789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00933 440 MobiDBLite consensus disorder prediction 200 223 - -
Bda08g00933 440 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 243 293 IPR011598 GO:0046983
Bda08g00933 440 CDD bHLH_AtBPE_like 233 318 - -
Bda08g00933 440 Gene3D - 240 314 IPR036638 GO:0046983
Bda08g00933 440 Pfam Helix-loop-helix DNA-binding domain 247 294 IPR011598 GO:0046983
Bda08g00933 440 MobiDBLite consensus disorder prediction 181 199 - -
Bda08g00933 440 MobiDBLite consensus disorder prediction 181 231 - -
Bda08g00933 440 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 24 421 IPR024097 GO:0006355
Bda08g00933 440 SMART finulus 249 299 IPR011598 GO:0046983
Bda08g00933 440 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 24 421 - -
Bda08g00933 440 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 241 312 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01607 Bda-Chr3:55365534 Bda08g00933 Bda-Chr8:17209090 4.47E-23 dispersed
Bda06g00931 Bda-Chr6:25133007 Bda08g00933 Bda-Chr8:17209090 0 dispersed
Bda08g00933 Bda-Chr8:17209090 Bda11g01162 Bda-Chr11:11889411 7.91E-54 dispersed
Bda15g00004 Bda-Chr15:995791 Bda08g00933 Bda-Chr8:17209090 1.09E-19 dispersed
Bda14g00556 Bda-Chr14:4083908 Bda08g00933 Bda-Chr8:17209090 6.53E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16303 PF00010 HLH 6.90E-06 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00933 - - jre:109013802 458.373