Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00939 ATGGCCGCGGCGAAAAGCAAGATTCTGTTCGTCGGTGGAACGGGATACATCGGAAAGTTCATTGTGGAAGCGAGCATTAAGGCCGGTCATCCAACCTTTGTTCTGATTCGCCAGTCCACTCTCTCCAACCCAGCCAAGTCTCAGATCATCGACAAGTTCAACAGCCTCGGCGTCCAGTTTTGCATCGGTGATCTCTCCGATCATGAGAGCCTGGTGAAAGCGGTTAAACAGGTGGATGTTGTGATATCCACCCTTGGTCACGCTCAGTTAGTCGATCAAGATAAACTTATTTCTGCCATCAAAGAATCCGGAAATGTCAAGAGGTTCTTCCCTTCGGAGTTTGGAAACGATGTGGATCGCGTCCATGCAGTGGAGCCAGCGAAATCCGCATTTGCTGCTAAAGCTAAAATTCGACGAGCTATAGAGGCTGAAGGAATTCCGCACACCATTGTTTCCTCCAACTTCTTTGCTGGTTACTTTCTTCCTAGTCTGTCACAGCCCGGAGCCACTTCTCCCCCAAGAGACAAAGTTGTAATATTAGGAGATGGAAATCCGAAAGGTAAAGAGAATCCATGTACATAA 582 47.94 MAAAKSKILFVGGTGYIGKFIVEASIKAGHPTFVLIRQSTLSNPAKSQIIDKFNSLGVQFCIGDLSDHESLVKAVKQVDVVISTLGHAQLVDQDKLISAIKESGNVKRFFPSEFGNDVDRVHAVEPAKSAFAAKAKIRRAIEAEGIPHTIVSSNFFAGYFLPSLSQPGATSPPRDKVVILGDGNPKGKENPCT 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17519720 17520557 - Bda029583.1 Bda08g00939 11795

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00939 193 Gene3D - 153 186 - -
Bda08g00939 193 PANTHER ISOFLAVONE REDUCTASE HOMOLOG P3-RELATED 1 187 - -
Bda08g00939 193 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 183 IPR036291 -
Bda08g00939 193 Gene3D - 7 152 - -
Bda08g00939 193 MobiDBLite consensus disorder prediction 167 193 - -
Bda08g00939 193 PANTHER PINORESINOL REDUCTASE-RELATED 1 187 - -
Bda08g00939 193 Pfam NmrA-like family 8 188 IPR008030 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00939 K23050 PCBER1; phenylcoumaran benzylic ether reductase [EC:1.3.1.-] - cpap:110826348 292.352
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00939 Bda-Chr8:17519720 Bda08g00941 Bda-Chr8:17607634 2.10E-129 dispersed
Bda08g00938 Bda-Chr8:17491180 Bda08g00939 Bda-Chr8:17519720 3.08E-20 tandem
Bda08g00939 Bda-Chr8:17519720 Bda08g00940 Bda-Chr8:17592696 1.48E-23 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g370 . . . Bda08g00939 . . Bma05g00446 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe16g00246 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015917 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 4 0 0 0 1 9
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00939 Bda_Chr08 FPKM 1.029529 1.03522 3.026241 3.434568 0.48503 0.270155 0.577356 4.534224 4.438106