Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00941 ATGGCGGCGGCAAAAAGCAAGATTCTGTTCGTCGGTGGAACGGGATACATCGGAAAGTTCATTGTGGAAGCGAGCATCAAGGCCGATCATCCAACTTTTGTTCTGATTCGCCAGTCCACTCTCTCCAACCCAGCCAAGTCTCAGATCATAGACAAGTTCAACAGCCTCGGCGTCCAGTTTTGCATCGGTGATCTCTCCGACCATGAGAGCCTGGTGAAAGCTGTTAAACGGGTGGATGTTGTGATATCCACCCTTGGTCACGCGCAGTTAGTCGATCAAGATAAACTTATTTCTGCCATCAAAGAATCCGGAAATGTCAAGAGGTTCTTCCCTTCGGAGTTTGGAAACGATGCGGATCGCGTCCATGCAGTGGAGCCCGCAAAATCGGCATATGCTGCTAAAGCTAAAATTCGACGAGCTGTAGAGGCTGAAGGAATTCCGCACACCATTGTTTCCTCCAACTTCTTTGCTGGTTACTTTCTTGCTAGTCTGTCACAGCCCGGAGCCACTTCTCCCCCAAGAGACAAAGTTGTAATATTAGGAGATGGAAATCCGAAAGCTATTTTCAACAAGGAAGAAGACATCGCAACCTATAGTATTAGAGCAGTTGACGATCCAAGAACCCTGAACAAAAACCTTTACATCAGATGCCCTGGCAACATATACTCGATGAATGATCTCGTGTCAATGTGGGAGAAAAAAATCGGCAGAACGGTTGATAAGGTCTACATTCCGGAGGACCAAGTGTTGAAAAACATTCAAGAGGCTGCTGTTCCTCTTGATTTGGTGTTGGCATATAGACATTCTGTATTTGTGAAGGGAGATCAAACTAACTTTGATATTGAGCCATCATTCGGAGTCGAGGCTTCGGAGCTTTATCCAGATGTTAAATACACAACAGTGGATGAGTACCTTAATCAATTTGTTTGA 930 45.48 MAAAKSKILFVGGTGYIGKFIVEASIKADHPTFVLIRQSTLSNPAKSQIIDKFNSLGVQFCIGDLSDHESLVKAVKRVDVVISTLGHAQLVDQDKLISAIKESGNVKRFFPSEFGNDADRVHAVEPAKSAYAAKAKIRRAVEAEGIPHTIVSSNFFAGYFLASLSQPGATSPPRDKVVILGDGNPKAIFNKEEDIATYSIRAVDDPRTLNKNLYIRCPGNIYSMNDLVSMWEKKIGRTVDKVYIPEDQVLKNIQEAAVPLDLVLAYRHSVFVKGDQTNFDIEPSFGVEASELYPDVKYTTVDEYLNQFV 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17607634 17609191 + Bda029587.1 Bda08g00941 11797

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00941 309 Gene3D - 7 295 - -
Bda08g00941 309 PANTHER PINORESINOL REDUCTASE-RELATED 3 309 - -
Bda08g00941 309 PANTHER PHENYLCOUMARAN BENZYLIC ETHER REDUCTASE 1 3 309 - -
Bda08g00941 309 CDD PCBER_SDR_a 7 304 IPR045312 GO:0016491
Bda08g00941 309 Gene3D - 155 305 - -
Bda08g00941 309 Pfam NmrA-like family 8 239 IPR008030 -
Bda08g00941 309 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 272 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00941 K23050 PCBER1; phenylcoumaran benzylic ether reductase [EC:1.3.1.-] - tcc:18607759 496.893
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02098 Bda-Chr1:57094941 Bda08g00941 Bda-Chr8:17607634 8.37E-75 dispersed
Bda06g00927 Bda-Chr6:24925719 Bda08g00941 Bda-Chr8:17607634 3.02E-160 dispersed
Bda06g00928 Bda-Chr6:25066284 Bda08g00941 Bda-Chr8:17607634 1.23E-175 dispersed
Bda07g00063 Bda-Chr7:886421 Bda08g00941 Bda-Chr8:17607634 4.18E-87 dispersed
Bda07g00064 Bda-Chr7:890595 Bda08g00941 Bda-Chr8:17607634 1.33E-82 dispersed
Bda08g00939 Bda-Chr8:17519720 Bda08g00941 Bda-Chr8:17607634 2.10E-129 dispersed
Bda08g00940 Bda-Chr8:17592696 Bda08g00941 Bda-Chr8:17607634 7.75E-20 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g368 . . . Bda08g00941 Bpe07g00424 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy11g00373 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000111 5 10 6 7 3 10 5 11 9 7 10 9 5 7 11 5 9 5 6 10 8 9 7 8 12 9 8 7 9 7 234