Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00942 ATGGGGAAAGTAAAGGGGAAGCATCGTTTGGACAAGTACTATCACCTAGCCAAAGAGCATGGCTATCGTTCTCGTGCCTCCTGGAAGCTCGCGCAGCTTGATTCTAAATACACCTTTCTCCGTTCCTCTCGCTCTGTTCTCGACCTCTGCGCCGCCCCTGGTGGCTGGATGCAGGTCGCTATTGAGCGTGTTCCAGTGGGCGGTCTTGTTCTTGGAGTTGATTTGGTTCCCATAGCTCCTATTCGCGGAGCAATAGCTATTCAGCAGGATATCACGAAGCCTGAATGCAAGGCCAGGATAAAGAAGATTATGAGTGAGAAAGGATGTGTAGCTTTCGATTTGGTGCTGCACGACGGGTCACCTAATGTCGGTGGTGCGTGGTCGCAGGAGGCCATGACTCAAAATGCTTTAGTTATTGATGCAGTGAAGTTGGCAACGCAATTTTTGGCTCCAAATGGCGCATTTGTGACGAAAGTCTTTAGGTCACAAGACTACAATTCTGTGCGCTATTGCCTTAAGCAGTTGTTTGAAAAGGTTGAGGTTGAAAAGCCAGCTGCTAGTAGATCTGCATCTGCAGAAATATATCTCTTGTGTCTTAAGTACAAAGCACCAGCAAAGATTGACCCACGTCTTCTTGATGTGAAACATTTGTTTCAGGGATCCATTGAACCCTCACGAATGGTTGTCGACGTACTTAGGGGAACAAAGCAGAAAAGGCATCGGGACGGTTATGAGGATGGTGACATGACTTTGAGAAAAGTGTCTCCGGTGGTTGATTTCATATGGTCTGATTCTCCTCTGGAGATCCTAGGTTCAGTCACTTCCTTGACTTTTGATGATCCAGCATGTTTGGCTATAAAGGATCATGCTTTGACTACCATAAATGTCAAATGTCTTTGTGATGATTTACGCGTTTTGAATGAGCGAGACTTTAGGGATCTACTGAAGTGGCGGATCAACATAAGAAAAGCCTTGTCATCTAAAGAAAAGAATGTCTCTACTCCTTCATTAGATGTTGAAAATGAGGAGAAGGAGGATGAGGATGATATGATACTTAATGAAATGGAGGAGCTGACCCATGCTACAGAGCGTAAGAAGAAACGGGAAAAGAAGATTCTTGCAAAAAGGCGAGCCAAGGAAAAGGCACGGAAAGCAACAGGGATGCAACTAGATGTCGTGGAAGACGGTTATACTGATCATGAATTGTTCTCTGGAAAGAAAGATCTTGCTGTTGTTGATTCAGTTGAATATGAACATGAGAACACCGATGTGGGAGAGCACGATGAAGACAAGGAGGCTGAAGAACCTTCATCTAGTGATGTGGATTCTGACGAAGAACGTCGAAGATACGATGAAGAAGTGGAAGAACTTTTAGACAAGGCATATGAACGCTATGTGGCCATAAAAGAGGGAAGTACGAAGCACAGGAAACGTGCAAAACAAGCCCACTCAGAAGATGCCCAACTGCTTGAGGATGGTGATGGTGAGAATGTTGGTGATGATATAATTCATTCTTACGATGATTCGGACGGAGACCAAGCTGTTGAGGATGAAAATCCTCTGGTGGTACCACTCCACGAGGGACACGAGCCAACACCAGATGAGGTTACCAACAAGTGGTTTAGTCAGGATATTTTTGCCGAGGCTGTGAAAGAGGGAGACTTGGGGAAATCTGATAGCGAGGATGACATGCAGATCGATGCAGCATCAAGAAAACTCACCATTTCCAGGAAGGCTAAGGTTAAGGCCAAGCAAAAACAAGGGAATAAAGATGTGGGTAATGGATCTCAAAGTGAAGCTTTGAAGTCAGAAAATGATTTTGAGATAGTCCCCGCCCCTGCTACTGATTCAAGCGATGACTCTTCGTCTTCGGATGATTCAGAGGATGATGACCCCAACACAAAAGCTGAAATATTGGCTTGTGCAAAGAAGATGCTGAGGAAAAAGCAAAGGAATCAGATTCTCGACGATTCATACAACAAATATATGTTTCACGACGAGGGTTTACCCAAGTGGTTCCTTGACGAAGAACAAAAGCATAGGCAGCCTATTAAGCCTGTAACAAAGGAGGAGATGGCTGCGATGAGAGCACAGTTCAAAGAAATCGATGCCCGTCCTGCTAAAAAGGTTGCACAGGCCAAAGCAAGGAAGAAGCGAGTGGCGATGAGGAAACTGGAGAAGGTTCGGAAGAAGGCAAATGCCATTTCTGACCAACCAGACATATCTGATCGCTCAAAAAGCAAGATGATTGAACAACTCTACAAGAAGGCCACACCTAAGAGACCTAAAAAGGAGTATGTGGTAGCAAAGAAAGGAGTACAAGTGAAGACTGGGAAGGGAAAAGTCCTTGTTGATAGACGAATGAAGAAAGACATGAGGGCTCAACGGGCGAGTACGTCTGACAAAGGTTCGAAGAAAGGGAAAAACTTCAAGGCTCCGAGAGGCAAAGGGGCCGACAAGGCTTCGGCAAAGAAAGGAAAAAAAAGACAGACAACTGCCATGCATGCCTGA 2511 45.24 MGKVKGKHRLDKYYHLAKEHGYRSRASWKLAQLDSKYTFLRSSRSVLDLCAAPGGWMQVAIERVPVGGLVLGVDLVPIAPIRGAIAIQQDITKPECKARIKKIMSEKGCVAFDLVLHDGSPNVGGAWSQEAMTQNALVIDAVKLATQFLAPNGAFVTKVFRSQDYNSVRYCLKQLFEKVEVEKPAASRSASAEIYLLCLKYKAPAKIDPRLLDVKHLFQGSIEPSRMVVDVLRGTKQKRHRDGYEDGDMTLRKVSPVVDFIWSDSPLEILGSVTSLTFDDPACLAIKDHALTTINVKCLCDDLRVLNERDFRDLLKWRINIRKALSSKEKNVSTPSLDVENEEKEDEDDMILNEMEELTHATERKKKREKKILAKRRAKEKARKATGMQLDVVEDGYTDHELFSGKKDLAVVDSVEYEHENTDVGEHDEDKEAEEPSSSDVDSDEERRRYDEEVEELLDKAYERYVAIKEGSTKHRKRAKQAHSEDAQLLEDGDGENVGDDIIHSYDDSDGDQAVEDENPLVVPLHEGHEPTPDEVTNKWFSQDIFAEAVKEGDLGKSDSEDDMQIDAASRKLTISRKAKVKAKQKQGNKDVGNGSQSEALKSENDFEIVPAPATDSSDDSSSSDDSEDDDPNTKAEILACAKKMLRKKQRNQILDDSYNKYMFHDEGLPKWFLDEEQKHRQPIKPVTKEEMAAMRAQFKEIDARPAKKVAQAKARKKRVAMRKLEKVRKKANAISDQPDISDRSKSKMIEQLYKKATPKRPKKEYVVAKKGVQVKTGKGKVLVDRRMKKDMRAQRASTSDKGSKKGKNFKAPRGKGADKASAKKGKKRQTTAMHA 836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17629521 17636082 + Bda029588.2 Bda08g00942 11798

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00942 836 MobiDBLite consensus disorder prediction 418 434 - -
Bda08g00942 836 Pfam Spb1 C-terminal domain 602 797 IPR012920 GO:0005634|GO:0006364|GO:0008168
Bda08g00942 836 MobiDBLite consensus disorder prediction 577 636 - -
Bda08g00942 836 MobiDBLite consensus disorder prediction 727 747 - -
Bda08g00942 836 MobiDBLite consensus disorder prediction 418 452 - -
Bda08g00942 836 MobiDBLite consensus disorder prediction 589 603 - -
Bda08g00942 836 MobiDBLite consensus disorder prediction 713 747 - -
Bda08g00942 836 MobiDBLite consensus disorder prediction 777 836 - -
Bda08g00942 836 MobiDBLite consensus disorder prediction 780 826 - -
Bda08g00942 836 Pfam Domain of unknown function (DUF3381) 235 383 IPR024576 -
Bda08g00942 836 MobiDBLite consensus disorder prediction 551 568 - -
Bda08g00942 836 Pfam FtsJ-like methyltransferase 22 201 IPR002877 GO:0008168|GO:0032259
Bda08g00942 836 Hamap AdoMet-dependent rRNA methyltransferase <gene_name> [SPB1]. 1 802 IPR028589 GO:0008649|GO:0031167
Bda08g00942 836 Hamap Ribosomal RNA large subunit methyltransferase E [rlmE]. 6 202 IPR015507 GO:0001510|GO:0008168
Bda08g00942 836 PANTHER RIBOSOMAL RNA METHYLTRANSFERASE 1 807 - -
Bda08g00942 836 Gene3D Vaccinia Virus protein VP39 19 208 IPR029063 -
Bda08g00942 836 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 21 202 IPR029063 -
Bda08g00942 836 MobiDBLite consensus disorder prediction 551 570 - -
Bda08g00942 836 MobiDBLite consensus disorder prediction 470 515 - -
Bda08g00942 836 PANTHER RRNA METHYLTRANSFERASE-RELATED 1 807 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00942 K14857 SPB1, FTSJ3; AdoMet-dependent rRNA methyltransferase SPB1 [EC:2.1.1.-] - csv:101209556 1073.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00935 Bda-Chr5:57915990 Bda08g00942 Bda-Chr8:17629521 1.18E-36 dispersed
Bda08g00942 Bda-Chr8:17629521 Bda13g00867 Bda-Chr13:10283789 5.95E-33 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g363 Blo02g00806 . . Bda08g00942 . . Bma05g00441 . . . Cma02g00391 . Car02g00254 Car20g00730 . . . . . . . . . . . . . . . . . Cone12ag1158 Cone8ag1207 . . Lsi10g00379 . Chy11g00372 . . . . . . . . . Sed01g0297 Cmo02g00398 Cmo20g00854 . . . . Cpe16g00247 Cpe05g01265 Bhi10g01995 Tan05g1293 Cmetu11g1187 . Hepe08g1009 . . . . . . . . . . Csa02g01268 . Cme11g00124
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007268 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35