Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00944 ATAAGAGCTATGGTGAAAGAGACTGCATATTATGATATATTGGGAGTCAAAGTAGACTCCTCCGCAGCTGAGATAAAGAAAGCTTACTATCCTCAAGTTCATCCGGATAAAAATCCAGGAGATCCAAAGGCTGCTGAAAATTTCCAGGCACTGGGGGAGGCTTATCAAGTGCTGAGTGATCCTGAAAGACGTGACGCGTATGACAAGTACGGAAAGGAAGGGGTAATTCAGGATGCCATGGTAGATCCTTCTGCTGTCTTTGGGATGCTTTTTGGCAGCGATGTATTTGAAGATTATGTTGGACAACTTGCTTTGGCAGCTTTGGCCTCTGTTGACATTGACGACTCCTCACAGGATGCTGAAGTGCAGAAGCAGAAAATTCAGGAAAAGTTGAAGGCATTTCAAAAGGAAAGAGAAGAGAGACTAATAAGTAGTCTGAAAGACCACCTTCGACCTTTTGTAGAAGGTCATAGAGATGAGTTTGTGAAGTGGGCAACTGCTGAAGCTCAGCGTCTCTCCAGTGCTGCTTTCGGTGAAGCAATGCTGCATACAATTGGATACATTTATACAAGGCAGGCTAAAAAAGAACTTGGTAAAGACAAGCGGTTTATGAAGGTGCCATTTTTGGCAGAATGGGTACGAGATAAAGGACATCAGATCAAATCGCAAGTGATGGCGGCTTCAGGGGCAGTTTCACTAATAGTAATACAAGAAGATTTGAAGAAGTTAAATCAAGGAGAAAACAGAGAGGAGAACATAATAAAAGCCCTGCAAGATAAGAAAGATGCCATGCTTAATTCCCTTTGGCAGATTAATGTTGTTGACATTGAGTCAACCCTCTCAAAAGTTTGCCAAGCGGTTCTTAATGATCCTAATGCATCCAAGGATGTACTCAAACTACGAGCCCAAGGATTGAAAAAGTTTGGAACAATCTTCCAAGGCGCCAAAGCTGCTTACAGTAGAGAAAACAGTCTCCGCCATGAAAGTGACAAATCCATCAATCCTACATCATCATGA 1017 42.48 IRAMVKETAYYDILGVKVDSSAAEIKKAYYPQVHPDKNPGDPKAAENFQALGEAYQVLSDPERRDAYDKYGKEGVIQDAMVDPSAVFGMLFGSDVFEDYVGQLALAALASVDIDDSSQDAEVQKQKIQEKLKAFQKEREERLISSLKDHLRPFVEGHRDEFVKWATAEAQRLSSAAFGEAMLHTIGYIYTRQAKKELGKDKRFMKVPFLAEWVRDKGHQIKSQVMAASGAVSLIVIQEDLKKLNQGENREENIIKALQDKKDAMLNSLWQINVVDIESTLSKVCQAVLNDPNASKDVLKLRAQGLKKFGTIFQGAKAAYSRENSLRHESDKSINPTSS 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17708643 17712515 + Bda029590.1 Bda08g00944 11800

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00944 338 Pfam DnaJ domain 10 68 IPR001623 -
Bda08g00944 338 SUPERFAMILY Chaperone J-domain 3 100 IPR036869 -
Bda08g00944 338 ProSitePatterns Nt-dnaJ domain signature. 48 67 IPR018253 -
Bda08g00944 338 PANTHER BNAA01G05380D PROTEIN 4 327 - -
Bda08g00944 338 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 4 327 - -
Bda08g00944 338 ProSiteProfiles dnaJ domain profile. 9 71 IPR001623 -
Bda08g00944 338 SMART dnaj_3 8 63 IPR001623 -
Bda08g00944 338 Coils Coil 240 260 - -
Bda08g00944 338 PRINTS DnaJ domain signature 11 29 IPR001623 -
Bda08g00944 338 PRINTS DnaJ domain signature 63 82 IPR001623 -
Bda08g00944 338 PRINTS DnaJ domain signature 43 63 IPR001623 -
Bda08g00944 338 CDD DnaJ 10 60 IPR001623 -
Bda08g00944 338 Pfam X-domain of DnaJ-containing 135 322 IPR026894 -
Bda08g00944 338 Coils Coil 117 137 - -
Bda08g00944 338 Gene3D DnaJ domain 2 85 IPR036869 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00944 - - - zju:107426812 539.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00342 Bda-Chr3:2893279 Bda08g00944 Bda-Chr8:17708643 2.31E-128 dispersed
Bda08g00944 Bda-Chr8:17708643 Bda05g00379 Bda-Chr5:48397828 1.81E-13 dispersed
Bda08g00944 Bda-Chr8:17708643 Bda01g01383 Bda-Chr1:49717568 7.66E-69 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g346 Blo02g00811 . . Bda08g00944 . . Bma05g00437 . . . Cma02g00379 Cma20g00831 Car02g00246 Car20g00716 . . . . . . . . . . . . . . . . . . Cone8ag1214 . . Lsi10g00394 . Chy11g00360 . . . . . . . . . . Cmo02g00386 Cmo20g00840 . . . . Cpe16g00258 Cpe05g01276 Bhi10g01979 Tan05g1273 . . Hepe08g0997 . . . . . . . . . . Csa02g01283 . Cme11g00137
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004762 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 7 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00944 Bda_Chr08 FPKM 3.992386 4.796585 4.701831 5.301682 28.252241 23.898066 40.214199 5.28614 6.520648