Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00947 AGGGTTGCAAGGACTGTTGTATTTGGAGGTCTAATTAATGCTAAAATGGCTGAAGATGTTCATTGCCGAGCTCGAGACATAGGTCCTGTTTGTTTAGTGACTTATCCATTGCCAAAAGAAGAAATTCAAACACATGGTTTGTTACGAGATGGATGCAAAATGGATGCTTCAGCCGTGCTTTATGATAGTGTAAAGTCTGCCCGCACTGCTATAGCAATGTTACATCAGAAAGAAATTGAAGGACGTACCATATGGGCCCGCCAACTGGGGGGTGAGGGTTCCAAAACTCAGAAATGGAAAATTATTGTCAGAAACCTTCCTTTCAAGGCCACAGAAAATGAAATAAAGAACACGTTTTCATCTGCTGGGTTTGTCTGGGACGTGCTCATTCCAAATAAATCTGACTCAGGATTGTCAAAGGGGTTTGCATTTGTGAAATTTACATGCAAACAAGATGTGGAGAATGCTATTAAACTGTTCAATGGTCAAAACTTTGGTAAAAGACCTATAGCTGTTGATTGGGCTGTTCCAAAGAAAATGTACAGTAATGGTGCCAATTCTACTCCGTTAAAAGATGGTAATTTGGAATTAAATGAAAGCAACAGAGATGGCGTCAGTAGTGATGAGGATTTGGAAGATGATCTGGAGGATTCTCAACAAAGCCCCCAGCATGCTGGAGTTAATTGTCTTCGTGATGATCCAATATCAACGGAGAAAGACATCACTGTTAAAGAACTTAATTTTGAAGAGGAAACAGACATGGCAAGAAAAGTTCTTAAGAACTTCATCTCACGATCAGCTGAAGAAACTATTCCTTCTGCTAGTTATGACAAGGATCGAAATTCTGGTGACGGTAGTGGGGATTTACCTTCCAATTCATCTGTTGTGCCTGCCAAAGTAGCAGCAGCAACCAACCCAAAAAAAGTAAATGAAAGTAAGCTGTTACATCTCAAAGAGGTGGATGATGATTTACAGAGAACAACTTTCATTAGCAACCTTCCTTTTGAGGTCGAGAATGAAGAAGTGAAACTAAGATTTTCTGGATTTGGTGAAGTTCAGTCGTTTGTCCCAGTTGTTCATCAAGTCACCAAGCGACCCAGAGGTACTGGTTTTCTCAAGTTTAAAACCATAGATGCTGCTAATGCTGCTGTTGCAGCAGCAAAATCTGAGTCTGGTTTGGGAATTTTTCTGAAAGGGAGACAATTGACAGTATTGAAGGCTTTGGATAAGAAATCGGCACATGACAAGGAATTGGAGAAGTCCAAGAATGACAATCACGACCAGCGCAATCTTTACTTGGCCAAGGAAGGCCTAATTATTGCCGGAACCCCAGCTGCTGAAGGTGTTTCAGCTAGTGACATGATGAAACGTGAAAGGTTAGAGAAGAAAAAGGCGACGAAACTTGAATCTCCAAATTTTCATGTTTCAAGGACTAGACTTGTCATATACAATTTACCTGTATCAATGAATGAAAAGAAACTAAAGGAGCTTTGTATTAAAGCAGTTCTTTCACGAGCTTCCAAGCAAAAGCCTGTGATTCGGCAGATAAAGTACGTAAAGGACACTAGGAAAGGAAATGCAGCGAAGAAAACCCAGAATCTTGGAGTTGCTTTTGTCGAGTTTTCTGAGCATCAGCATGCACTAGTGGCCTTGAGAGTTCTCAACAACAATCCGGAAACATTTGGACCTGCAAATCGTCCAATTGTTGAGTTTGCTGTTGATAATGTGCAAATGTTGAAGCTACGAAAAGCCAAGCTACAAGTTCAGTCGCAGGGTCCCAATAGAGACCAAAAAAATGGCGATAAAAGAGATGCTCCTGATGTCCCTGTGCATAGGAAAGAGAAACCCAAGAAGTGGAAATCAGTAGATAATGATAGGTCAAGTAAAAATCAAGTTTTGCATGAAGGTGAACAAGAACCAAGAATACCTAATGAAGCTGCTACAGAAGGAGGCATTAGCACAGAGAAGCTGAAAGCCAAACCAGAGAGTGGAAAGCTGGCGGAGTCGTCTCTGAAAACCAACTCAAGACAGAGAAAACAAAAGACAGAAAGTTGGAGGCAACGAAATGCTGGATCGGGTGAAGTGGCAGCTGCTGAGACTCATAAACCAGGATCTTTGGAGGGAAGAGATGTACAACCCAAAAAGAGGAAGCTGCATGAGGAAGTCAGTCAAAGTAATGGAGAAGAAAATTTGAAGACCCGAAAAAGACCAAAGAAGAACAAGGAACCCGTAGGGAGAGACGTTGCAGATAGACTGGACATGCTCATTGAACAATACAAATCCAAGTTCTCACAGCCGAGTTCCCGTGCAATCGGTGGCAATAGGAAAGATTCTGGACAAGTGAGAAAATGGTTCCAATCTTAA 2364 41.5 RVARTVVFGGLINAKMAEDVHCRARDIGPVCLVTYPLPKEEIQTHGLLRDGCKMDASAVLYDSVKSARTAIAMLHQKEIEGRTIWARQLGGEGSKTQKWKIIVRNLPFKATENEIKNTFSSAGFVWDVLIPNKSDSGLSKGFAFVKFTCKQDVENAIKLFNGQNFGKRPIAVDWAVPKKMYSNGANSTPLKDGNLELNESNRDGVSSDEDLEDDLEDSQQSPQHAGVNCLRDDPISTEKDITVKELNFEEETDMARKVLKNFISRSAEETIPSASYDKDRNSGDGSGDLPSNSSVVPAKVAAATNPKKVNESKLLHLKEVDDDLQRTTFISNLPFEVENEEVKLRFSGFGEVQSFVPVVHQVTKRPRGTGFLKFKTIDAANAAVAAAKSESGLGIFLKGRQLTVLKALDKKSAHDKELEKSKNDNHDQRNLYLAKEGLIIAGTPAAEGVSASDMMKRERLEKKKATKLESPNFHVSRTRLVIYNLPVSMNEKKLKELCIKAVLSRASKQKPVIRQIKYVKDTRKGNAAKKTQNLGVAFVEFSEHQHALVALRVLNNNPETFGPANRPIVEFAVDNVQMLKLRKAKLQVQSQGPNRDQKNGDKRDAPDVPVHRKEKPKKWKSVDNDRSSKNQVLHEGEQEPRIPNEAATEGGISTEKLKAKPESGKLAESSLKTNSRQRKQKTESWRQRNAGSGEVAAAETHKPGSLEGRDVQPKKRKLHEEVSQSNGEENLKTRKRPKKNKEPVGRDVADRLDMLIEQYKSKFSQPSSRAIGGNRKDSGQVRKWFQS 787
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17789171 17794262 + Bda029593.1 Bda08g00947 11803

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00947 787 MobiDBLite consensus disorder prediction 585 787 - -
Bda08g00947 787 MobiDBLite consensus disorder prediction 271 303 - -
Bda08g00947 787 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 99 177 IPR000504 GO:0003723
Bda08g00947 787 Gene3D - 87 207 IPR012677 -
Bda08g00947 787 Gene3D - 477 572 IPR012677 -
Bda08g00947 787 MobiDBLite consensus disorder prediction 185 233 - -
Bda08g00947 787 MobiDBLite consensus disorder prediction 596 642 - -
Bda08g00947 787 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 329 387 IPR000504 GO:0003723
Bda08g00947 787 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 170 IPR000504 GO:0003723
Bda08g00947 787 Gene3D - 316 417 IPR012677 -
Bda08g00947 787 SUPERFAMILY RNA-binding domain, RBD 326 498 IPR035979 GO:0003676
Bda08g00947 787 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 478 568 IPR000504 GO:0003723
Bda08g00947 787 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 325 590 - -
Bda08g00947 787 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 44 200 - -
Bda08g00947 787 SUPERFAMILY RNA-binding domain, RBD 470 575 IPR035979 GO:0003676
Bda08g00947 787 MobiDBLite consensus disorder prediction 703 757 - -
Bda08g00947 787 SMART rrm1_1 327 405 IPR000504 GO:0003723
Bda08g00947 787 SMART rrm1_1 100 173 IPR000504 GO:0003723
Bda08g00947 787 SMART rrm1_1 479 571 IPR000504 GO:0003723
Bda08g00947 787 MobiDBLite consensus disorder prediction 271 299 - -
Bda08g00947 787 MobiDBLite consensus disorder prediction 760 787 - -
Bda08g00947 787 CDD RRM2_RBM28_like 100 176 - -
Bda08g00947 787 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 326 409 IPR000504 GO:0003723
Bda08g00947 787 SUPERFAMILY RNA-binding domain, RBD 95 182 IPR035979 GO:0003676
Bda08g00947 787 CDD RRM4_RBM28_like 478 575 - -
Bda08g00947 787 PANTHER RNA BINDING PROTEIN 325 590 - -
Bda08g00947 787 PANTHER RNA BINDING PROTEIN 44 200 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00947 K14573 NOP4, RBM28; nucleolar protein 4 - csin:114283042 848.58
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g00441 Bda08g00947 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00947 Bda-Chr8:17789171 Bda07g00874 Bda-Chr7:10204933 5.44E-07 dispersed
Bda08g00947 Bda-Chr8:17789171 Bda14g00367 Bda-Chr14:2649388 4.61E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g6 . . . Bda08g00947 . . Bma05g00433 . . . . . . . . . Cpe15g00552 . . . . . . . . . . . . . . . . Cone3ag1223 Cone10ag1108 . Csa07g00016 . Cme01g01366 . . . . . Bpe05g00327 . . . . . . . . Car19g00524 . . . . . . . . . . . . . . . . Lsi11g01124 . Chy01g00761 .
Vvi3g287 . Blo15g00712 Bda06g00441 Bda08g00947 Bpe07g00674 . . Bma12g00880 . . Cma02g00298 Cma20g00716 Car02g00178 Car20g00615 . . . . . . . . . . . . . . . . . . . . Cone10ag1214 Lsi10g00829 . . . . . . . . . . . . Cmo02g00293 . . . . . . Cpe05g01338 . . . . . . . . . . . . . . . . . Cme11g00154
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009278 1 1 1 3 1 1 1 1 1 1 1 1 0 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00947 Bda_Chr08 FPKM 51.275963 60.65815 83.961815 91.577576 81.44001 79.263054 81.691338 103.139091 105.318031