Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00955 ATGAAGATCCGGTGCGACTTCTGCGGCAAAGACGAAGCCTCTGTGTATTGCTCCGCCGACGAAGCCGCCCTCTGCCACGGCTGTGATCGCCATGTCCACCACGCTAACAAGCTCGCCGGACAGCACACCCGTTTCTCTCTCCTCCATCCTACCTTCAAGGAATCACCTCTCTGCGACATCTGCCAGGATAGACGAGCTTTCCTTTTCTGTCAAGAAGATAGGGCGATCCTTTGTCGAGAATGCGATGTTCCGATTCACTTAGCCAACGAACATACTCAGAAACACAACAGATTTCTTCTCACCGGCGTCAAGCTTTCTTCAACGTCTTCTCTATACCCAACTTGTTCTTCGTCTCCTGGATATGACACATCCATTGATTCTGAAAATTGCAGAAAGAGATCAAAGACTGTTAACAATGGAGTTTCTTCATGTCCATCAGAAGTCTTTCCGGCTGGAGGCAGACAAATCAGTGATGCAGGATCCTTTTCAGCCAGTCGCATATCAGAATACTTGGAGACGTTGCCCGGATGGTGTATAGAAGATTTTCTTGATCCAGCATCGTCAATCCATGGCTACTGTCAAATTTGA 588 48.13 MKIRCDFCGKDEASVYCSADEAALCHGCDRHVHHANKLAGQHTRFSLLHPTFKESPLCDICQDRRAFLFCQEDRAILCRECDVPIHLANEHTQKHNRFLLTGVKLSSTSSLYPTCSSSPGYDTSIDSENCRKRSKTVNNGVSSCPSEVFPAGGRQISDAGSFSASRISEYLETLPGWCIEDFLDPASSIHGYCQI 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18590465 18591150 + Bda029619.1 Bda08g00955 11811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00955 195 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Bda08g00955 195 Pfam B-box zinc finger 3 44 IPR000315 GO:0008270
Bda08g00955 195 Pfam B-box zinc finger 54 92 IPR000315 GO:0008270
Bda08g00955 195 Gene3D Classic Zinc Finger 1 100 - -
Bda08g00955 195 SMART bboxneu5 4 47 IPR000315 GO:0008270
Bda08g00955 195 SMART bboxneu5 53 100 IPR000315 GO:0008270
Bda08g00955 195 CDD Bbox1_BBX-like 57 100 - -
Bda08g00955 195 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Bda08g00955 195 PANTHER B-BOX ZINC FINGER PROTEIN 20 1 194 - -
Bda08g00955 195 CDD Bbox1_BBX-like 5 47 - -
Bda08g00955 195 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 194 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda08g00955 Bda14g00574 CCT
Bda08g00955 Bda14g00574 ECH
Bda06g00954 Bda08g00955 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01521 Bda-Chr1:51110063 Bda08g00955 Bda-Chr8:18590465 5.12E-63 dispersed
Bda08g00955 Bda-Chr8:18590465 Bda14g00989 Bda-Chr14:8030086 1.59E-22 dispersed
Bda14g00574 Bda-Chr14:4384124 Bda08g00955 Bda-Chr8:18590465 3.43E-85 wgd
Bda06g00954 Bda-Chr6:26410287 Bda08g00955 Bda-Chr8:18590465 1.54E-104 wgd
Bda08g00955 Bda-Chr8:18590465 Bda08g01236 Bda-Chr8:50639497 6.08E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16306 PF00643 zf-B_box 8.60E-07 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00955 - - zju:107426654 256.914