Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda08g00955 | ATGAAGATCCGGTGCGACTTCTGCGGCAAAGACGAAGCCTCTGTGTATTGCTCCGCCGACGAAGCCGCCCTCTGCCACGGCTGTGATCGCCATGTCCACCACGCTAACAAGCTCGCCGGACAGCACACCCGTTTCTCTCTCCTCCATCCTACCTTCAAGGAATCACCTCTCTGCGACATCTGCCAGGATAGACGAGCTTTCCTTTTCTGTCAAGAAGATAGGGCGATCCTTTGTCGAGAATGCGATGTTCCGATTCACTTAGCCAACGAACATACTCAGAAACACAACAGATTTCTTCTCACCGGCGTCAAGCTTTCTTCAACGTCTTCTCTATACCCAACTTGTTCTTCGTCTCCTGGATATGACACATCCATTGATTCTGAAAATTGCAGAAAGAGATCAAAGACTGTTAACAATGGAGTTTCTTCATGTCCATCAGAAGTCTTTCCGGCTGGAGGCAGACAAATCAGTGATGCAGGATCCTTTTCAGCCAGTCGCATATCAGAATACTTGGAGACGTTGCCCGGATGGTGTATAGAAGATTTTCTTGATCCAGCATCGTCAATCCATGGCTACTGTCAAATTTGA | 588 | 48.13 | MKIRCDFCGKDEASVYCSADEAALCHGCDRHVHHANKLAGQHTRFSLLHPTFKESPLCDICQDRRAFLFCQEDRAILCRECDVPIHLANEHTQKHNRFLLTGVKLSSTSSLYPTCSSSPGYDTSIDSENCRKRSKTVNNGVSSCPSEVFPAGGRQISDAGSFSASRISEYLETLPGWCIEDFLDPASSIHGYCQI | 195 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 18590465 | 18591150 | + | Bda029619.1 | Bda08g00955 | 11811 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda08g00955 | 195 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270 | |
Bda08g00955 | 195 | Pfam | B-box zinc finger | 3 | 44 | IPR000315 | GO:0008270 | |
Bda08g00955 | 195 | Pfam | B-box zinc finger | 54 | 92 | IPR000315 | GO:0008270 | |
Bda08g00955 | 195 | Gene3D | Classic Zinc Finger | 1 | 100 | - | - | |
Bda08g00955 | 195 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270 | |
Bda08g00955 | 195 | SMART | bboxneu5 | 53 | 100 | IPR000315 | GO:0008270 | |
Bda08g00955 | 195 | CDD | Bbox1_BBX-like | 57 | 100 | - | - | |
Bda08g00955 | 195 | ProSiteProfiles | Zinc finger B-box type profile. | 53 | 100 | IPR000315 | GO:0008270 | |
Bda08g00955 | 195 | PANTHER | B-BOX ZINC FINGER PROTEIN 20 | 1 | 194 | - | - | |
Bda08g00955 | 195 | CDD | Bbox1_BBX-like | 5 | 47 | - | - | |
Bda08g00955 | 195 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 194 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bda08g00955 | Bda14g00574 | CCT | |
Bda08g00955 | Bda14g00574 | ECH | |
Bda06g00954 | Bda08g00955 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda01g01521 | Bda-Chr1:51110063 | Bda08g00955 | Bda-Chr8:18590465 | 5.12E-63 | dispersed | |
Bda08g00955 | Bda-Chr8:18590465 | Bda14g00989 | Bda-Chr14:8030086 | 1.59E-22 | dispersed | |
Bda14g00574 | Bda-Chr14:4384124 | Bda08g00955 | Bda-Chr8:18590465 | 3.43E-85 | wgd | |
Bda06g00954 | Bda-Chr6:26410287 | Bda08g00955 | Bda-Chr8:18590465 | 1.54E-104 | wgd | |
Bda08g00955 | Bda-Chr8:18590465 | Bda08g01236 | Bda-Chr8:50639497 | 6.08E-60 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16306 | PF00643 | zf-B_box | 8.60E-07 | No_clan | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda08g00955 | - | - | zju:107426654 | 256.914 |