Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00957 GCTGTCCTCAAGCAGTTTGGAGGTGGCGGCTATGGGGGTTCCGATAATGTCATAACTGACGAGGCAGAACTCCAACAACATCAGAAACTCGAGAGGCTTTATATATCAACTCGTGCTGGCAAGCATTTTCAAAGGGATATTGTCCGTGGAGTTGAGGGTTACATTGTTACCGGTTCTAAACAAGTTGAAATTGCAGGGACAAAGTTGTCTGAGGATAGTAGGAAATATGGTTCTGAAAATACATGCACTAGTGGCAACACATTAACTAGAGCTGCATCAAATTATGGACGTGCCCGAGCTCAAATGGAAAAGGAACGTGGGAATATGTTAAAAGCTCTTGGAACACAGGTGGCAGAGCCTCTACGAGCAATGGTAATGGGAGCTCCGTTGGAAGATGCGAGGCATCTTGCTCAACGCTATGATAGAATGCGACAAGAAGCTGAAGCTCATGCTATTGAAGTTTTCAAGCGGCAAGCAAAAGTCAGAGAAACGCCTGGAAACGCTGAAAATGCTATGAAACTTGAAGCCGCTGAAGCAAAACTGCAAGAACTTAAGTCCAATATGGCCATTTTGGGAAAAGAAGCTTCCGCTGCTATGGTTGCTGTTGAAGCTCAACAACAGAGGTTAACTCTCCAAAGACTAATTGCAATGGTAGAAGCAGAACGTACATATCATCAAAAAGTTCTTCAGATACTTGATCAACTTGAGGGTGAGATGATATCAGAGCGGCAACGAATTGAAGCACCGCCTACTCCAATTGTTGATAATACAAGTACTATGCCTCCACCGTCATATGAAGAGACTAATGGTGTGTATGCTTCTGAAGTAACTAATGGATTGACAGATGCCATGGGTTACTTCTTAGGGGAGGTTTGTGTGATTACTTTGACATTTAAATTTCCATTATTTTCTGTCCTACTTTTGTTTATATTTTCAATTCCACTACAGGTTATGCATCAATATCAAGCTGAATCTGATGTGGAGCTAAGTTTGTCAATTGGTGACTACGTTGTTGTTCGAAAGGTAACTAACAGTGGTTGGGCCGAGGGAGAATGCAGAGGAAAAGCAGGTTGGTTCCCATTTGGATATATTGAAAGAAGGGATCGAGTTCTAGCTAGCAAGGTAGCTGAGGTGTTC 1137 42.74 AVLKQFGGGGYGGSDNVITDEAELQQHQKLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIAGTKLSEDSRKYGSENTCTSGNTLTRAASNYGRARAQMEKERGNMLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAHAIEVFKRQAKVRETPGNAENAMKLEAAEAKLQELKSNMAILGKEASAAMVAVEAQQQRLTLQRLIAMVEAERTYHQKVLQILDQLEGEMISERQRIEAPPTPIVDNTSTMPPPSYEETNGVYASEVTNGLTDAMGYFLGEVCVITLTFKFPLFSVLLLFIFSIPLQVMHQYQAESDVELSLSIGDYVVVRKVTNSGWAEGECRGKAGWFPFGYIERRDRVLASKVAEVF 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18678618 18689026 - Bda034031 Bda08g00957 11813

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00957 379 Gene3D SH3 Domains 308 377 - -
Bda08g00957 379 PANTHER PROTEIN, PUTATIVE-RELATED 1 292 - -
Bda08g00957 379 PRINTS Neutrophil cytosol factor 2 signature 351 364 - -
Bda08g00957 379 PRINTS Neutrophil cytosol factor 2 signature 315 335 - -
Bda08g00957 379 PRINTS Neutrophil cytosol factor 2 signature 335 351 - -
Bda08g00957 379 ProSiteProfiles Src homology 3 (SH3) domain profile. 310 369 IPR001452 GO:0005515
Bda08g00957 379 PANTHER SH3 DOMAIN-CONTAINING 1 292 - -
Bda08g00957 379 Coils Coil 130 150 - -
Bda08g00957 379 SMART SH3_2 313 368 IPR001452 GO:0005515
Bda08g00957 379 CDD BAR_SH3P_plant 28 238 - -
Bda08g00957 379 SUPERFAMILY SH3-domain 250 368 IPR036028 GO:0005515
Bda08g00957 379 Pfam Variant SH3 domain 317 365 IPR001452 GO:0005515
Bda08g00957 379 Coils Coil 167 194 - -
Bda08g00957 379 PANTHER SH3 DOMAIN-CONTAINING 316 379 - -
Bda08g00957 379 Gene3D Arfaptin homology (AH) domain/BAR domain 27 248 IPR027267 -
Bda08g00957 379 Coils Coil 201 221 - -
Bda08g00957 379 PANTHER PROTEIN, PUTATIVE-RELATED 316 379 - -
Bda08g00957 379 SUPERFAMILY BAR/IMD domain-like 27 239 IPR027267 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00957 - - - jre:109006528 596.275
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g00963 Bda08g00957 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00951 Bda-Chr7:11044667 Bda08g00957 Bda-Chr8:18678618 4.00E-100 dispersed
Bda08g00957 Bda-Chr8:18678618 Bda09g00465 Bda-Chr9:6065706 5.98E-95 dispersed
Bda06g00963 Bda-Chr6:27076547 Bda08g00957 Bda-Chr8:18678618 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g26 . Blo15g00668 Bda06g00963 Bda08g00957 . . Bma05g00428 . . . Cma02g00365 . Car02g00233 . . . . . . . . . . . . . . . . . . . . . Cone10ag1099 Lsi10g00414 . Chy11g00338 . . . . . . Bpe05g00321 . . Sed01g0261 Cmo02g00369 . . . . . . Cpe05g01290 Bhi10g01943 Tan05g1240 Cmetu11g1701 . Hepe08g0977 . . . . . . . . . . Csa02g01306 . Cme11g00167
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007122 2 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00957 Bda_Chr08 FPKM 105.547058 100.656746 98.680061 101.388435 126.567375 137.271423 140.197388 141.557922 140.146133