Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00958 AGTAAAGAAAATGCAAAAGAGTCGCTTCTATACAGCTACAAGCATGGGTTTTCTGGGTTTGCTGCAGTGTTAACCGAGCTTCAAGCCAAGTCTATTGCAGATTTCCCAGGAGTAGTTGGTGTGGTTCCTAATAGGATTCTGAGCCTGCACACTACTAGAAGTTGGGACTTTTTGCAAGTGAAGCCCCATTATGCTAATGGAATTCTCACAAAAAGTCAATCAGGAGCTGGTTCAATAATAGGAGTAATGGACACTGGAATTTGGCCAGAATCTCCTAGCTTCAACGATGATGGTATGAGTGATGTTCCTTCTCACTGGAGAGGGATCTGCCAAGTTGGAGAAGAATTCAATCGCTCCCATTGTAATAGGAAAATTATTGGTGCTCGTTGGTATAATAAAGGGTATGAAGCTGAATTTGGAAAATTAAATACAAGCAATGGGGTTGAGTTTCTCTCTCCTCGAGATGCTGACGGCCATGGCACACACACATCGTCTACTGCAGCTGGGGTTTCAGTGAAAAAGGCTAGCTTCCGAGGACTAGCTCAAGGAGTGGCAAGAGGTGGAGCTCCATCAGCTCATTTGGCTGTCTACAAAGTTTGTTGGGCAACTGGTGGCTGCAGCTCAGCCGACCTCCTTGCTGCGTTTGACGATGCAATCTTTGATAGTGTTGATGTAATATCTGCCTCCATCGGTTCATCGCCTCCACTTCCTTCTTATGTTGACGATGTTATATCTATTGGCACTTTCCATGCCATAGCAAAAGGAATTTCTACCATATGCTCGGCCGGAAATTCCGGCCCAGAGCCTCAAACAGTTATTAACACGGCCCCGTGGATTATAACTGTAGCAGCAAGCACTATCGATCGAGCTTTTCCTGTCAGAATCAAACTGGGAAACAACAAAACTTTCATGGGTCAAGCTTTGTATACAGGGATGGATACCTCGAAATTTTATCCTATTGTCTATGGAGAAGACATTGCCTCTAATGGTGTTGATGAAAACAAGGCTAGTGGTTGTAGTCATGGAAGCTTAAATGCAACATTAGCAAGAGGAAAATTGGTTCTTTGTTTTCAGTCTCGTTATCAGAGATCCGCCATAATTGCGGCAACAACTGTGATGGACAGTGAAGGGGCTGGTATTATTTTCGCCCAGACTCCCACTAAGGATGTTGCCTTATCTTGGGGTTTCCTCTACGTTCAAATAGACTATTCAATTGGAACGTCTCTTCTCTCTTACATGGAAGCGACCAGAAACCCTGTAGTCAAGTTTAGTCTGACAAAAACAACCTTGGGGCTACAGATTTCACCTGAAATTGCTTACTTTTCGTCTCGAGGACCTAATTCCCTCGCTCCCTCTGTATTGAAGTTTGAACGTGTTTTGCAGCCTGATGTTGCTGCTCCAGGTGTTAATATTTTAGCCTCGTGGTCTCCAGCCTCTTCCGACTTCCCATCAGTGACCCAAAATCAGCAGTATCCTGCTAGTTTCAAAATTGAATCAGGAACCTCCATGTCTTGCCCTCATATATCTGGTATAGTAGCCATGCTTAAAGCTCTCCATCCTTCATGGAGCCCTGCTGCCATCAAATCTGCACTAGTTACCACAGCTTCAATAAACGATGAATATGGTCAGAGAATTGTGGCTGAGGGAGCTCCCCATAAAAATGCAGACCCATTTGACTATGGAGGAGGGCAAGTTGATCCCAACAAAGCCACGGACCCTGGGCTTGTTTTCGACATGAAAAATGCAGATTATATACAATTCCTTTGCTCAATGGGATACAATGATAGTGCAGTGAGCTCGATGACTAAGACTCATACTCAGAATTTAAACCTACCATCCATTGCCATTCCAGAGCTAAAGACGAGTAGAACAGTGTTGAGAGAAGTCACCAATGTCGGTCTGAAAAACTCTATATATGTCGTTCGTGTAGAAGCTCCGGCCGGATTTTCCGTGAGAGTTGAACCATTAGTTTTATCGTTCAATTCTTCGATAGAGAAGCTCAAATTTAAGGTACCTCAGAGTCAAGGAAGATACTCATTTGGCAATCTAATTTGGGAAGATAGTTTGCATGTTGTGAGGATACCCTTAGCAGTTAAAACTGTGATTGATGATTTTTATGCAGAAACTTGA 2130 43.57 SKENAKESLLYSYKHGFSGFAAVLTELQAKSIADFPGVVGVVPNRILSLHTTRSWDFLQVKPHYANGILTKSQSGAGSIIGVMDTGIWPESPSFNDDGMSDVPSHWRGICQVGEEFNRSHCNRKIIGARWYNKGYEAEFGKLNTSNGVEFLSPRDADGHGTHTSSTAAGVSVKKASFRGLAQGVARGGAPSAHLAVYKVCWATGGCSSADLLAAFDDAIFDSVDVISASIGSSPPLPSYVDDVISIGTFHAIAKGISTICSAGNSGPEPQTVINTAPWIITVAASTIDRAFPVRIKLGNNKTFMGQALYTGMDTSKFYPIVYGEDIASNGVDENKASGCSHGSLNATLARGKLVLCFQSRYQRSAIIAATTVMDSEGAGIIFAQTPTKDVALSWGFLYVQIDYSIGTSLLSYMEATRNPVVKFSLTKTTLGLQISPEIAYFSSRGPNSLAPSVLKFERVLQPDVAAPGVNILASWSPASSDFPSVTQNQQYPASFKIESGTSMSCPHISGIVAMLKALHPSWSPAAIKSALVTTASINDEYGQRIVAEGAPHKNADPFDYGGGQVDPNKATDPGLVFDMKNADYIQFLCSMGYNDSAVSSMTKTHTQNLNLPSIAIPELKTSRTVLREVTNVGLKNSIYVVRVEAPAGFSVRVEPLVLSFNSSIEKLKFKVPQSQGRYSFGNLIWEDSLHVVRIPLAVKTVIDDFYAET 709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18725052 18728585 + Bda029623.1 Bda08g00958 11814

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00958 709 CDD PA_subtilisin_like 295 422 - -
Bda08g00958 709 SUPERFAMILY Subtilisin-like 49 575 IPR036852 GO:0004252|GO:0006508
Bda08g00958 709 Gene3D - 588 702 - -
Bda08g00958 709 ProSiteProfiles Serine proteases, subtilase domain profile. 54 571 - -
Bda08g00958 709 Pfam Subtilase family 75 539 IPR000209 GO:0006508|GO:0008236
Bda08g00958 709 PANTHER OS09G0530800 PROTEIN 1 698 - -
Bda08g00958 709 CDD Peptidases_S8_3 49 536 IPR034197 -
Bda08g00958 709 Pfam Fibronectin type-III domain 608 698 IPR041469 -
Bda08g00958 709 Gene3D - 288 430 - -
Bda08g00958 709 Pfam Peptidase inhibitor I9 3 50 IPR010259 -
Bda08g00958 709 Gene3D Peptidase S8/S53 domain 78 584 IPR036852 GO:0004252|GO:0006508
Bda08g00958 709 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 1 50 IPR037045 -
Bda08g00958 709 ProSitePatterns Serine proteases, subtilase family, serine active site. 500 510 IPR023828 -
Bda08g00958 709 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 1 698 IPR045051 -
Bda08g00958 709 PRINTS Subtilisin serine protease family (S8) signature 499 515 IPR015500 -
Bda08g00958 709 PRINTS Subtilisin serine protease family (S8) signature 75 94 IPR015500 -
Bda08g00958 709 PRINTS Subtilisin serine protease family (S8) signature 155 168 IPR015500 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00958 - - - qsu:112001023 1031.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00472 Bda-Chr1:31796977 Bda08g00958 Bda-Chr8:18725052 7.80E-164 dispersed
Bda06g01090 Bda-Chr6:38852391 Bda08g00958 Bda-Chr8:18725052 0 dispersed
Bda08g00958 Bda-Chr8:18725052 Bda01g01763 Bda-Chr1:53847778 5.16E-172 dispersed
Bda08g00954 Bda-Chr8:18433779 Bda08g00958 Bda-Chr8:18725052 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g27 . . . Bda08g00958 . . Bma05g00427 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1212 . . . . . . . . . . Bpe05g00320 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001239 3 1 3 3 2 1 1 1 1 1 1 1 2 1 1 4 1 1 2 1 1 2 2 5 9 1 5 5 5 6 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00958 Bda_Chr08 FPKM 31.027399 32.640095 30.474756 30.683378 33.185692 31.860895 32.665714 33.176373 32.987541