Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00959 ATGGAGAGCATGGAAGCAAAAGCTTTGAAATCAAGCTTTCGCCTGAAATTGGCTGCGAAGTCGACACATCCAGCCATTTTGGAAGACTCATGCACCTGCAACGGAACAAACGCCGGTTCCGGCGAAGATTTTGCAGTAGAAGAGTTTTTTAACTTCTCTAATGGAGATTTAGAACAATGGTCTTCTGCAGAGGGGGAAGAAGAAGAAGAGTCGGAAAAGGATAGACTCTCTGTTTCTTCGCTGGACCCTGTCGATGATAGTAATTTGAACCCCACCAGTTTCTCCGCCGCCGGCGATGAGGACTCTCTTCTTTCCGAGCTAGCCGTTCCGAGCGATGATTTAGCTGCCCTTGAATGGGTATCTCATTTTGTTGAGGGCTCTCTCTTAGAATTCTCGCTTCTGCAACCCGCTGTGAAAACGAAATCCCAAACTCGTTCCGAAGTGGAAAGTAGACCGATAGTTTCAGGAGTTTCGTGTTTATCTTCACCTATTCCGGCCAAACCCAGAACCAGAAAGGCCAGAACATCCGGCCGAGTTTGGTCTGGGTCTCTACTGACTGAGTCGTCTTTGTCGTCTTCTTCTTCTTCGTCGTCGTCGTCTGGGTTTACTGGAGCTCCTTGTCTTTTCTTCACCAACTCTGGCCAGGACATGGAGAATCGTCATGCCGCGGCCGAACTACTGGCGAAGAAGCAGCAGAAGAAATCAGCGGATGAAGCGGACGGTTCAGCTAGCGGAACTCAGCTTCAGCGGCGGTGCAGTCATTGCCAGGTTCAGAAGACCCCACAGTGGAGAACCGGCCCACAAGGTGCCAAAACGCTCTGCAATGCTTGTGGGGTCCGGTACAAGTCCGGTCGCCTTTTCCCGGAGTACAGACCGGCCTGTAGTCCCACTTTTTCCAGCGACATCCATTCCAACAGTCATCGTAAGGTTTTGGAGTTGAGAAAGAGGAAGGACATAGACGCTCCGGCTTCTGGATTTGGTCGAATGGTTCCGAGTTTTTAG 1002 50.6 MESMEAKALKSSFRLKLAAKSTHPAILEDSCTCNGTNAGSGEDFAVEEFFNFSNGDLEQWSSAEGEEEEESEKDRLSVSSLDPVDDSNLNPTSFSAAGDEDSLLSELAVPSDDLAALEWVSHFVEGSLLEFSLLQPAVKTKSQTRSEVESRPIVSGVSCLSSPIPAKPRTRKARTSGRVWSGSLLTESSLSSSSSSSSSSGFTGAPCLFFTNSGQDMENRHAAAELLAKKQQKKSADEADGSASGTQLQRRCSHCQVQKTPQWRTGPQGAKTLCNACGVRYKSGRLFPEYRPACSPTFSSDIHSNSHRKVLELRKRKDIDAPASGFGRMVPSF 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18763743 18764830 + Bda029624.1 Bda08g00959 11815

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00959 333 ProSitePatterns GATA-type zinc finger domain. 252 277 IPR000679 GO:0006355|GO:0043565
Bda08g00959 333 PANTHER GATA TRANSCRIPTION FACTOR 3 333 - -
Bda08g00959 333 PANTHER GATA TRANSCRIPTION FACTOR 3 333 - -
Bda08g00959 333 Gene3D - 244 319 IPR013088 GO:0006355|GO:0008270
Bda08g00959 333 MobiDBLite consensus disorder prediction 81 99 - -
Bda08g00959 333 PIRSF Txn_fac_GATA_plant 2 325 IPR016679 GO:0003677|GO:0005634|GO:0045893
Bda08g00959 333 Pfam GATA zinc finger 252 285 IPR000679 GO:0006355|GO:0043565
Bda08g00959 333 MobiDBLite consensus disorder prediction 228 249 - -
Bda08g00959 333 ProSiteProfiles GATA-type zinc finger domain profile. 246 282 IPR000679 GO:0006355|GO:0043565
Bda08g00959 333 MobiDBLite consensus disorder prediction 60 100 - -
Bda08g00959 333 SMART GATA_3 246 300 IPR000679 GO:0006355|GO:0043565
Bda08g00959 333 CDD ZnF_GATA 251 308 IPR000679 GO:0006355|GO:0043565
Bda08g00959 333 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 249 309 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00959 - - - pop:7470022 296.975
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g00964 Bda08g00959 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00959 Bda-Chr8:18763743 Bda11g01846 Bda-Chr11:53656847 9.56E-58 dispersed
Bda08g00953 Bda-Chr8:18365029 Bda08g00959 Bda-Chr8:18763743 0 proximal
Bda06g00964 Bda-Chr6:27255148 Bda08g00959 Bda-Chr8:18763743 3.84E-166 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g28 Blo02g00646 . Bda06g00964 Bda08g00959 Bpe07g00497 . Bma05g00426 . . . Cma02g00364 Cma20g00811 Car02g00231 Car20g00695 . . . . . . . . . . . . . . . . . Cone12ag1182 Cone8ag1227 . . Lsi10g00416 . . . . . . . . Bpe05g00319 . . . Cmo02g00367 Cmo20g00819 . . . . Cpe16g00276 Cpe05g01292 Bhi10g01940 Tan05g1237 . . Hepe08g0974 . . . . . . . . . . Csa02g01309 . Cme11g00170
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003888 3 2 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 3 0 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16307 PF00320 GATA 4.70E-16 CL0167 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00959 Bda_Chr08 FPKM 0.600629 1.397478 1.955331 2.945437 3.408638 1.882139 2.688651 2.407429 1.697241