Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00961 ATGGCTGCTGGCAATGACATTGTTGAAGATTCTTTTTCAACCGTCAGCTTTCCAGAATCTTTATGGCAAAGCGAAGATCTTTCCCCTGAAGATGTTGCTTGGATCGATTCTTGTCTTATCAAAGATGTGGAGGTTGATGACACGCAATGGGATTCTCTTAAAGATGCTTTGTTAGAGATCCTTAGTTCTCAGACTGAACCACTTGAATCTTCTACCGGTACGGCTGGGAGTTTTCCAAGGGGAACTGATATAGAGATGCTTGCCCCACCTGACGAGGAAGAGACGTCAAATGTCCCCAGAGGAAGTGCCGATGATCCTCTTGTTTCCAACGATGTAGCTGCAACCAGAATCGATGGCAGTGAAGATATCTATGATTCGAACCCAAGTTTCACGGAAAGTCCTTTTCTGCCAACATACAAGGATGAAATCGAAGAGACTAAAAATTTGGAATCAGAATCTAATTCAGAAGTTTCCGAGACAGAGCCATCAAGCGATGATATTTTCAGAGTCTGGGATCTGAACACTCCATCAGAGGAGGGTGAGCTTGTGGAGCAGTTGAACAAAGCCATGGCTGAAAGTCAAGTTGAATCCGCTCCTCCTTTAACATTGGAAGATACTACTAATGTATTGGAAGATCTGAAAGTAGAGTCCTTTGACGATTCAACCCTTTCCTTCGATGATCTAATACTTGGCATTGCAGACCTATCCCTAGATCAGAAAAGGTAA 726 43.25 MAAGNDIVEDSFSTVSFPESLWQSEDLSPEDVAWIDSCLIKDVEVDDTQWDSLKDALLEILSSQTEPLESSTGTAGSFPRGTDIEMLAPPDEEETSNVPRGSADDPLVSNDVAATRIDGSEDIYDSNPSFTESPFLPTYKDEIEETKNLESESNSEVSETEPSSDDIFRVWDLNTPSEEGELVEQLNKAMAESQVESAPPLTLEDTTNVLEDLKVESFDDSTLSFDDLILGIADLSLDQKR 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18851645 18852370 + Bda029626.1 Bda08g00961 11817

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00961 241 PANTHER OS02G0469000 PROTEIN 1 240 - -
Bda08g00961 241 MobiDBLite consensus disorder prediction 138 154 - -
Bda08g00961 241 MobiDBLite consensus disorder prediction 64 166 - -
Bda08g00961 241 MobiDBLite consensus disorder prediction 64 78 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00961 - - - vvi:100245210 155.606
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda14g00580 Bda-Chr14:4441600 Bda08g00961 Bda-Chr8:18851645 1.86E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g41 Blo02g00648 . . Bda08g00961 . . Bma05g00420 . . . . . . . . Cpe04g00101 . Bhi05g01257 . . . . . . Cla02g00486 Cam02g0495 Cec02g0495 Cco02g0501 Clacu02g0499 Cmu02g0494 Cre02g0827 . . . . . Csa07g00036 . . . . . . . Bpe05g00315 . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00745 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011943 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 0 1 1 1 1 1 1 1 0 1 3 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00961 Bda_Chr08 FPKM 0.931018 0.840921 0.451063 0.468996 1.71171 2.009181 2.320634 0.584967 0.680614