Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00964 ATGCCGGCCCTGGCTTATTGCGTGGACGCTGCAACTCCTCCTGGCTACGCCTATGCCGGGGATAGCCCTCTTCCATCGCAGGTACAATATTCTGACGTACCTCCTGCGACCGTAACCACCAACGCTGTTACCGTCACCGCTGGCGTTGAGAATTCCTATTGGTCTCCGCCTCTCTCAGCTGCTTTGTACAAGATTGATGGGTGGGGATTACCCTATTTTTCTGTGAACGATTCCGGTAATATGACGGTCCGACCTCATGGGAAAGCAACTCTACCTCATCAGGAGATCGATTTGCTCAAAATTGTGAAGAAAGTTTCAGATCCGAAATCCTCCGGTGGCCTGGGATTACAGCTTCCTCTCATCGTTCGCTTTCCTGACGTGCTTAAGAACCGCCTGGAGTCGCTCCAATCAGCTTTTGATTTTGCCATCCAATCCCAAGGATACGGAGCTCATTATCAAGGTGTTTACCCAGTCAAATGCAACCAGGACCGATTCGTTGTTGAAGATATCGTTGAATTCGGATCCCCGTTTAGGTTTGGCCTGGAGGCAGGGTCAAAACCAGAGCTTCTCCTTGCAATGAGCTGTTTGTGCAAGGGGAACCCAGATGCTCTTCTGGTTTGCAACGGTTTCAAGGACGCAGATTACATTTCGCTGGCGTTGCTTGCTAGGAAACTAGCTTTGAACACAGTGATAGTGCTTGAACAAGAGGAAGAGCTTGATCTGGTTATCAACCTGAGCAGGAAACTCTCCGTCCGCCCTGTGATTGGTTTACGTGCAAAGCTGAGGACAAAACATTCAGGTCATTTCGGTTCAACTTCTGGCGAGAAAGGTAAGTTTGGACTAACAACTACGCAGATTTTGCGTGTGGCGAGGAAGCTTGAACAAGTTGGGATGCTGGATTGTCTTCAGTTACTGCATTTTCATATTGGGTCCCAGATTCCATCCACTTCCCTGCTTTCAGACGGCGTCAGTGAGGCTGCTCAGATTTTTTGTGAACTAGTCCGTCTCGGGGCCAGCATGCAGGTGATAGACATTGGAGGGGGTCTGGGTATTGATTACGATGGATCTAAATCGAATGATTCTGAAATTTCAATTGGTTATGAGCTGGAAGAGTACGCTTCAGCAGTTGTTCAAGCGGTACGTTCTGTCTGCGACCGCAGGGCCGTCAAGCACCCCATAATCTGCAGCGAAAGTGGCCGAGCAATTGTTTCTCATCACTCCGTTCTTATATTCGAGGCTGTTTCTGCTACTTCTTATGAGGCTCCGTCATTGACTTCGATTGGACTGCAGTGCCTTGTTGAGGGTCTGAAAGAGGATGCTCGTGAAGATTACTGGAACCTATTGGCAACGGCATACAGAGGTGATTACGAGGCTTGCATGAAATATGCCGAGCAGTTGAAGCAACGCTGCGTTGAGCAATTCAAGGACGGCTCATTGGGTCTGGAACTACTTGCTACCGTTGATGGCCTCTGTGCTTTTGTTTCTAAAGCGGTTGGGGCGTCTGATCCCGTGCGTACTTACCATGTCAATCTGTCTATTTTCACTTCCATTCCTGATTTCTGGGGCATTGGGCAATTGTTTCCCATAGTCCCAATTCATCGTCTTGATCAGAGGCCTGCTGTAAGAGGAATTCTGTCTGATTTAACCTGCGACAGTGATGGAAAAATCGATAAGTTCATTGGGGGAGAGAGTAGCTTGCTTCTTCATGAACTGGAAGGCAATGGCAGCTTGCAGGGCGGTGGAGGGTCTTACTACCTGGGGATGTTCTTGGGCGGGGCTTACGAGGAGGCACTTGGTGGAGTTCACAACCTGTTTGGTGGGCCTAGCGTAGTTCGTGTTTCGCAGAGTGACGGCCCCCACAGCTTTGCGGTGACGCGTGCAATGCCAGGACCATCTTGCGCGGATGTCCTCCGGGTGATGCAGCACGAGCCCCAGCTCATGTTCCAGACTCTCAAGCACAGGGCTGAGGAGTGTGGCGGGGAAGACGAGGATAACCTGGCTAATAGCCTTGCCTGTTTCTTCCGCAATATGCCTTACCTGCTCACAACTTCTTGCAGCTTGACTGCGGTCAACAACAACGGCTTCTATTGCAACGATGATGATTTTTCTGCTGCTGTTGCTTCTGCTGCAGGAGACGACGACCAGTGGTCTTATTGCTACGCTTGA 2166 50.09 MPALAYCVDAATPPGYAYAGDSPLPSQVQYSDVPPATVTTNAVTVTAGVENSYWSPPLSAALYKIDGWGLPYFSVNDSGNMTVRPHGKATLPHQEIDLLKIVKKVSDPKSSGGLGLQLPLIVRFPDVLKNRLESLQSAFDFAIQSQGYGAHYQGVYPVKCNQDRFVVEDIVEFGSPFRFGLEAGSKPELLLAMSCLCKGNPDALLVCNGFKDADYISLALLARKLALNTVIVLEQEEELDLVINLSRKLSVRPVIGLRAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVARKLEQVGMLDCLQLLHFHIGSQIPSTSLLSDGVSEAAQIFCELVRLGASMQVIDIGGGLGIDYDGSKSNDSEISIGYELEEYASAVVQAVRSVCDRRAVKHPIICSESGRAIVSHHSVLIFEAVSATSYEAPSLTSIGLQCLVEGLKEDAREDYWNLLATAYRGDYEACMKYAEQLKQRCVEQFKDGSLGLELLATVDGLCAFVSKAVGASDPVRTYHVNLSIFTSIPDFWGIGQLFPIVPIHRLDQRPAVRGILSDLTCDSDGKIDKFIGGESSLLLHELEGNGSLQGGGGSYYLGMFLGGAYEEALGGVHNLFGGPSVVRVSQSDGPHSFAVTRAMPGPSCADVLRVMQHEPQLMFQTLKHRAEECGGEDEDNLANSLACFFRNMPYLLTTSCSLTAVNNNGFYCNDDDFSAAVASAAGDDDQWSYCYA 721
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18920377 18922542 + Bda029631.1 Bda08g00964 11820

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00964 721 PANTHER ARGININE DECARBOXYLASE 1 721 IPR002985 GO:0006527|GO:0008295|GO:0008792
Bda08g00964 721 Gene3D - 423 503 - -
Bda08g00964 721 PIRSF ARGDC 36 684 IPR002985 GO:0006527|GO:0008295|GO:0008792
Bda08g00964 721 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 156 174 IPR022653 -
Bda08g00964 721 PRINTS Arginine decarboxylase signature 256 278 IPR002985 GO:0006527|GO:0008295|GO:0008792
Bda08g00964 721 PRINTS Arginine decarboxylase signature 535 560 IPR002985 GO:0006527|GO:0008295|GO:0008792
Bda08g00964 721 PRINTS Arginine decarboxylase signature 592 613 IPR002985 GO:0006527|GO:0008295|GO:0008792
Bda08g00964 721 PRINTS Arginine decarboxylase signature 384 401 IPR002985 GO:0006527|GO:0008295|GO:0008792
Bda08g00964 721 PRINTS Arginine decarboxylase signature 510 531 IPR002985 GO:0006527|GO:0008295|GO:0008792
Bda08g00964 721 PRINTS Arginine decarboxylase signature 148 162 IPR002985 GO:0006527|GO:0008295|GO:0008792
Bda08g00964 721 PRINTS Arginine decarboxylase signature 124 139 IPR002985 GO:0006527|GO:0008295|GO:0008792
Bda08g00964 721 PRINTS Arginine decarboxylase signature 232 253 IPR002985 GO:0006527|GO:0008295|GO:0008792
Bda08g00964 721 PRINTS Arginine decarboxylase signature 206 221 IPR002985 GO:0006527|GO:0008295|GO:0008792
Bda08g00964 721 Gene3D Alanine racemase 125 406 IPR029066 -
Bda08g00964 721 PANTHER ARGININE DECARBOXYLASE 1 721 - -
Bda08g00964 721 CDD PLPDE_III_ADC 115 613 IPR002985 GO:0006527|GO:0008295|GO:0008792
Bda08g00964 721 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 149 404 IPR022644 GO:0003824
Bda08g00964 721 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 63 615 IPR009006 GO:0003824
Bda08g00964 721 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 394 413 IPR000183 GO:0003824
Bda08g00964 721 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 299 312 IPR000183 GO:0003824
Bda08g00964 721 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 156 174 IPR000183 GO:0003824
Bda08g00964 721 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 180 192 IPR000183 GO:0003824
Bda08g00964 721 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 592 605 IPR000183 GO:0003824
Bda08g00964 721 TIGRFAM speA: arginine decarboxylase 55 680 IPR002985 GO:0006527|GO:0008295|GO:0008792
Bda08g00964 721 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 337 350 IPR022657 -
Bda08g00964 721 SUPERFAMILY PLP-binding barrel 124 406 IPR029066 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00964 K01583 E4.1.1.19; arginine decarboxylase [EC:4.1.1.19] - zju:107426702 1100.89
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g00971 Bda08g00964 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g01179 Bda-Chr4:62430763 Bda08g00964 Bda-Chr8:18920377 5.39E-10 transposed
Bda13g00792 Bda-Chr13:9372904 Bda08g00964 Bda-Chr8:18920377 1.84E-06 transposed
Bda06g00971 Bda-Chr6:29277506 Bda08g00964 Bda-Chr8:18920377 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g51 Blo02g00651 Blo15g00662 Bda06g00971 Bda08g00964 Bpe07g00493 . . Bma12g00535 . . Cma02g00359 Cma20g00804 Car02g00226 Car20g00688 . . . . . . . . . . . . . . . . . Cone12ag1192 Cone8ag1240 . . Lsi10g00424 . Chy11g00329 . . . . . . . . . Sed05g3557 Cmo02g00362 Cmo20g00812 . . . . Cpe16g00280 Cpe05g01297 Bhi10g01930 Tan05g1229 Cmetu11g0754 . Hepe08g0965 . . . . . . . . . . Csa02g01315 . Cme11g00178
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004369 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 4 1 1 1 1 2 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00964 Bda_Chr08 FPKM 1.293812 0.985286 3.263322 2.438629 6.947086 7.362069 8.52946 6.753243 5.459159