Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00966 TCCAATCATCTTTTCATGTCTTTCAGGTTTCTTCCCATTGCCAATGTGGGTCGAATAATGAAGAAAGTGATCCCTGGAAACGGAAAAATTTCGAAAGATGCAAAGGAAACCGTTCAAGAATGTGTTTCTGAGTTCATTAGCTTTGTCACCGGCGAGGCTTCCGATAAATGTCAAAGAGAAAAACGAAAGACCATTAATGGAGATGATATTCTATGGGCTATCACCACCCTAGGGTTTGGAGATTATGTTGAACCACTTAAATCTTATCTTGACAAGTACAGAGAAATCGAATGTGAAAAGCTTAATGTTCCAAAACAACACAGAGCTGAGCAAAGGTTGTTGCATGGTCAACAACATGATCAGCTTCATCAACAACAAGAACAAATATTACCATACAAAGATTCATATTCTCCTGCCAATATACCCTCTCAACCCTCTTTTGGCTTGTCGAATCAGCCATTTTCGTTGCCGTTTTCCTTGCAGCAACAAGATCAGGTTGATTCGGTGGGTCATTGGTAG 519 40.08 SNHLFMSFRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDILWAITTLGFGDYVEPLKSYLDKYREIECEKLNVPKQHRAEQRLLHGQQHDQLHQQQEQILPYKDSYSPANIPSQPSFGLSNQPFSLPFSLQQQDQVDSVGHW 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19048930 19049448 + Bda029633.1 Bda08g00966 11822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00966 172 PRINTS CCAAT-binding transcription factor subunit A signature 38 56 - -
Bda08g00966 172 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Bda08g00966 172 PRINTS CCAAT-binding transcription factor subunit A signature 76 94 - -
Bda08g00966 172 ProSitePatterns NF-YB/HAP3 subunit signature. 41 57 IPR003956 GO:0005634|GO:0006355|GO:0043565
Bda08g00966 172 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 10 74 IPR003958 -
Bda08g00966 172 SUPERFAMILY Histone-fold 9 127 IPR009072 GO:0046982
Bda08g00966 172 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 9 164 IPR027113 GO:0001228|GO:0006355|GO:0016602
Bda08g00966 172 Gene3D Histone, subunit A 7 134 IPR009072 GO:0046982
Bda08g00966 172 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-7 9 164 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00966 Bda-Chr8:19048930 Bda13g00590 Bda-Chr13:6927795 3.42E-55 dispersed
Bda08g00966 Bda-Chr8:19048930 Bda06g00410 Bda-Chr6:6267634 1.55E-55 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16308 PF00808 CBFD_NFYB_HMF 7.50E-28 CL0012 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00966 K08065 - cpap:110824736 236.884