Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00971 ATGGCTACCAAGAGTTTGATCCCCGCTTCCCTTTTCTTCACCAGAAAACCCCTAACGGGACCATCTTTACCTTTCTTCTCTCGCTTAACATATGTTTCGCATACCCACGCGAGCCGTCTCGTAGTTGCCGCGAAAAATACTATCATTGACCATGTCTCTGCGTACAACTCGGGCCATAATGGAGGCTCCGTCTTTTATGATGATGAGGATGACGAAAAGCCCCACGAGGAATGCGGTGTGGTTGGAATTTACGGTGACCCAGAAGCCTCTCGTCTGTGTTATTTGGCCCTTCATGCGCTTCAGCACCGCGGTCAGGAGGGCGCCGGTATCGTTTCTGTGAAAGACAACGTTTTTCAATCGGTAACCGGACTTGGTCTAGTCTCTGACGTTTTCGACCAGTCAAACCTCGACCAATTGCGGGGTGACTTAGCAATAGGGCACGTCCGCTATTCCACTGCTGGGTCTTCCATTCTCAAGAACGTCCAGCCGTTCGTCGCGGGTTACGGATTTGGCTCCGTCGGGGTTGCCCACAACGGTAATTTGGTCAACTATCGTTCCCTGAGATGGAAGCTTGAGGACAAAGGTTCCATCTTCAATACTAGTTCCGACACAGAATTGGTTCTCCACCTCATTGCAGTTTCTAAGCAAAAGCTTTTTCTTTTGAGGATTGTAGATGCATGCGAGCAGCTTGAGGGGGCATACTCCTTGGTTTTCGTTACAGAGGATAAGTTGGTCGCTGTGCGTGATCCTTTTGGTTTTAGGCCTTTAGTCATGGGTAGGAGAAGCAACGGAGCAGTTGTTTTTGCCTCTGAAACTTGTGCACTTGATTTGATAGAGGCCACATACGAAAGAGAAGTTTATCCTGGGGAGGTTGTGGTGGTTGATAAATCTGGCGTTCAATCCCTTTGTCTAATGGCTCATCCTCAACAAAAAGCCTGCATCTTTGAACACATATACTTTGCCCTCCCTAGCTCGGTTGTTTTCGGCCGATCAGCGTACGAGTCTCGCCGTGCTTTTGGGGAGATACTTGCAAAGGAAGCCCCAGTTGACTGTGATGTCGTGATTGCAGTTCCAGATTCAGGGGTGGTAGCTGCGCTCGGCTATGCTGCTAAAGCAGGAGTGGCTTTTCAGCAGGGTTTGATTCGATCTCACTATGTTGGGAGAACTTTCATAGAGCCATCTCAGAAGATTAGGGACTTTGGAGTGAAGCTCAAGCTCTCACCAGTCAGGGCTGTTTTGGAAGGCAGGAGGGTCGTGGTTGTAGACGATTCAATTGTGAGAGGAACCACATCTTCTAAAATCGTGAGGTTGATCAAAGAAGCTGGAGCAAAGGAGGTTCATATGAGGATAGCAAGTCCTCCAATTATAAGCTCCTGTTACTATGGAGTAGACACCCCGAGCTCAGAGGAGTTGATTTCTAACAGGATGAGTGTTGAGGAGGTCAGAGAGTTTATTGGGTCTGATTCGCTCGCCTTTCTACCATTGGATAGCTTGAAGAAGCTTTTAGGCAGTGATTCCCCAAATTATTGCTATGCTTGCTTTTCTGGGCATTACCCGGTCGAACCCAGATAG 1572 48.41 MATKSLIPASLFFTRKPLTGPSLPFFSRLTYVSHTHASRLVVAAKNTIIDHVSAYNSGHNGGSVFYDDEDDEKPHEECGVVGIYGDPEASRLCYLALHALQHRGQEGAGIVSVKDNVFQSVTGLGLVSDVFDQSNLDQLRGDLAIGHVRYSTAGSSILKNVQPFVAGYGFGSVGVAHNGNLVNYRSLRWKLEDKGSIFNTSSDTELVLHLIAVSKQKLFLLRIVDACEQLEGAYSLVFVTEDKLVAVRDPFGFRPLVMGRRSNGAVVFASETCALDLIEATYEREVYPGEVVVVDKSGVQSLCLMAHPQQKACIFEHIYFALPSSVVFGRSAYESRRAFGEILAKEAPVDCDVVIAVPDSGVVAALGYAAKAGVAFQQGLIRSHYVGRTFIEPSQKIRDFGVKLKLSPVRAVLEGRRVVVVDDSIVRGTTSSKIVRLIKEAGAKEVHMRIASPPIISSCYYGVDTPSSEELISNRMSVEEVREFIGSDSLAFLPLDSLKKLLGSDSPNYCYACFSGHYPVEPR 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19194029 19195600 + Bda029638.1 Bda08g00971 11827

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00971 523 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 78 519 IPR029055 -
Bda08g00971 523 Pfam Glutamine amidotransferase domain 159 275 IPR017932 -
Bda08g00971 523 Hamap Amidophosphoribosyltransferase [purF]. 77 518 IPR005854 GO:0004044|GO:0009113
Bda08g00971 523 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 2, CHLOROPLASTIC 40 522 - -
Bda08g00971 523 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 78 301 IPR029055 -
Bda08g00971 523 CDD GPATase_N 78 328 IPR035584 -
Bda08g00971 523 SUPERFAMILY PRTase-like 313 521 IPR029057 -
Bda08g00971 523 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 40 522 - -
Bda08g00971 523 CDD PRTases_typeI 340 466 IPR000836 -
Bda08g00971 523 PIRSF Pur1 74 523 IPR005854 GO:0004044|GO:0009113
Bda08g00971 523 Gene3D - 337 501 IPR029057 -
Bda08g00971 523 Pfam Phosphoribosyl transferase domain 337 447 IPR000836 -
Bda08g00971 523 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 78 297 IPR017932 -
Bda08g00971 523 TIGRFAM purF: amidophosphoribosyltransferase 78 519 IPR005854 GO:0004044|GO:0009113
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00971 K00764 purF, PPAT; amidophosphoribosyltransferase [EC:2.4.2.14] - zju:107426528 811.216
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00971 Bda-Chr8:19194029 Bda13g00855 Bda-Chr13:10131513 7.81E-16 dispersed
Bda08g00971 Bda-Chr8:19194029 Bda08g00974 Bda-Chr8:19283426 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g59 Blo02g00658 . . Bda08g00971 . . Bma05g00406 . . . Cma02g00358 Cma20g00802 Car02g00225 Car20g00687 . . . . . . . . . . . . . . . . . Cone12ag1199 Cone8ag1246 Cone3ag1203 . Lsi10g00425 . Chy11g00327 . . . . . . . . . Sed01g0252 Cmo02g00360 Cmo20g00810 . . . . Cpe16g00281 Cpe05g01298 Bhi10g01929 Tan05g1228 Cmetu11g1361 . Hepe08g0964 . . . . . . . . . . Csa02g01318 . Cme11g00452
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda13g01256 BCT 33 188 PRT Gene Family AT1G80050 74.4 1.4e-63 239.2
Bda08g00567 . 30 180 PRT Gene Family AT1G80050 75.5 2.6e-62 235.0
Bda08g01357 . 27 177 PRT Gene Family AT1G80050 70.2 2.5e-57 218.4
Bda01g01004 BCT,CCT 33 156 PRT Gene Family AT1G80050 57.8 8.0e-43 170.2
Bda13g01256 BCT 1 148 PRT Gene Family AT5G11160 84.5 2.4e-66 248.4
Bda08g00567 . 8 145 PRT Gene Family AT5G11160 73.9 3.6e-54 208.0
Bda08g01357 . 5 142 PRT Gene Family AT5G11160 71.7 1.4e-53 206.1
Bda01g01004 BCT,CCT 1 118 PRT Gene Family AT5G11160 63.5 1.8e-42 169.1
Bda06g00037 CCT 8 119 PRT Gene Family AT5G11160 69.6 4.0e-37 151.4
Bda08g01357 . 4 179 PRT Gene Family AT1G27450 82.4 7.9e-79 290.0
Bda08g00567 . 7 181 PRT Gene Family AT1G27450 73.1 1.2e-71 266.2
Bda13g01256 BCT 11 183 PRT Gene Family AT1G27450 71.7 4.3e-69 257.7
Bda01g01004 BCT,CCT 11 153 PRT Gene Family AT1G27450 54.9 7.9e-47 183.7
Bda06g00037 CCT 7 119 PRT Gene Family AT1G27450 73.5 5.9e-42 167.5
Bda08g00974 . 90 573 PRT Gene Family AT2G16570 84.6 7.2e-240 826.6
Bda08g00971 . 65 522 PRT Gene Family AT2G16570 81.9 5.7e-221 763.8
Bda08g00974 . 90 573 PRT Gene Family AT4G34740 85.6 1.0e-241 832.8
Bda08g00971 . 67 522 PRT Gene Family AT4G34740 83.2 3.3e-221 764.6
Bda08g00974 . 91 546 PRT Gene Family AT4G38880 75.1 2.4e-197 685.3
Bda08g00971 . 60 520 PRT Gene Family AT4G38880 73.0 4.3e-194 674.5
Bda08g01357 . 4 179 PRT Gene Family AT1G27450 82.4 7.9e-79 290.0
Bda08g00567 . 7 181 PRT Gene Family AT1G27450 73.1 1.2e-71 266.2
Bda13g01256 BCT 11 183 PRT Gene Family AT1G27450 71.7 4.3e-69 257.7
Bda01g01004 BCT,CCT 11 153 PRT Gene Family AT1G27450 54.9 7.9e-47 183.7
Bda06g00037 CCT 7 119 PRT Gene Family AT1G27450 73.5 5.9e-42 167.5
Bda13g01256 BCT 33 188 PRT Gene Family AT1G80050 74.4 1.4e-63 239.2
Bda08g00567 . 30 180 PRT Gene Family AT1G80050 75.5 2.6e-62 235.0
Bda08g01357 . 27 177 PRT Gene Family AT1G80050 70.2 2.5e-57 218.4
Bda01g01004 BCT,CCT 33 156 PRT Gene Family AT1G80050 57.8 8.0e-43 170.2
Bda06g00037 CCT 5 98 PRT Gene Family AT4G22570 85.1 1.6e-44 175.3
Bda08g00567 . 5 97 PRT Gene Family AT4G22570 82.8 2.0e-42 168.3
Bda08g01357 . 4 94 PRT Gene Family AT4G22570 81.3 3.9e-38 154.1
Bda13g01256 BCT 11 100 PRT Gene Family AT4G22570 77.8 3.3e-37 151.0
Bda06g00037 CCT 1 96 PRT Gene Family AT4G12440 83.3 7.7e-41 162.9
Bda08g00567 . 1 96 PRT Gene Family AT4G12440 81.3 1.1e-39 159.1
Bda13g01256 BCT 1 148 PRT Gene Family AT5G11160 84.5 2.4e-66 248.4
Bda08g00567 . 8 145 PRT Gene Family AT5G11160 73.9 3.6e-54 208.0
Bda08g01357 . 5 142 PRT Gene Family AT5G11160 71.7 1.4e-53 206.1
Bda01g01004 BCT,CCT 1 118 PRT Gene Family AT5G11160 63.5 1.8e-42 169.1
Bda06g00037 CCT 8 119 PRT Gene Family AT5G11160 69.6 4.0e-37 151.4
Bda01g00859 . 1 186 PRT Gene Family AT1G71750 61.4 6.6e-63 237.3
Bda09g00447 . 16 470 PRT Gene Family AT1G55810 82.2 1.1e-219 759.2
Bda07g00427 . 28 502 PRT Gene Family AT1G55810 80.0 6.2e-218 753.4
Bda13g01653 . 61 483 PRT Gene Family AT1G55810 78.3 2.5e-195 678.3
Bda09g00447 . 67 474 PRT Gene Family AT3G27440 75.2 8.6e-182 633.3
Bda13g01653 . 81 483 PRT Gene Family AT3G27440 75.4 9.9e-178 619.8
Bda07g00427 . 79 509 PRT Gene Family AT3G27440 71.2 3.2e-176 614.8
Bda13g01653 . 1 483 PRT Gene Family AT3G27190 83.4 2.0e-235 811.6
Bda09g00447 . 3 469 PRT Gene Family AT3G27190 74.7 1.4e-207 719.2
Bda07g00427 . 15 501 PRT Gene Family AT3G27190 70.9 4.8e-200 694.1
Bda05g00954 . 1 235 PRT Gene Family AT3G53900 75.0 2.8e-102 368.6
Bda09g00447 . 1 470 PRT Gene Family AT4G26510 83.7 1.0e-231 799.3
Bda07g00427 . 13 502 PRT Gene Family AT4G26510 80.1 2.9e-226 781.2
Bda13g01653 . 11 483 PRT Gene Family AT4G26510 74.4 3.7e-205 711.1
Bda13g01653 . 1 483 PRT Gene Family AT5G40870 84.7 7.6e-238 819.7
Bda09g00447 . 3 472 PRT Gene Family AT5G40870 73.4 9.0e-207 716.5
Bda07g00427 . 15 504 PRT Gene Family AT5G40870 70.5 4.8e-200 694.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005155 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00971 Bda_Chr08 FPKM 0.0 0.0 1.281899 1.125462 8.18638 10.002382 13.889455 0.0 0.0