Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00972 ATGGATGTGAGCTTCTCTGCTAAGCCACGGACACTTTCTTTAACTTCCTGTCCTTCTTTCTCACCGTCCAAGCTCACCACCGTCCGAAGACAGTTTCTTGGCTCTTCTCAAAGTCTCAGACCACCGATTGGTCTCCACTCTCGACGAAAATCCAGCGGTCTGCGTGATGCTCATCCTCCTCTAGTTCGAGCTTCCTTGGACTTTAATTCAATTCTCAATGCTGTTGCCGTAGTAACTTTCTCTGCGGTTTCTGTTGTTTACTGGAGCCATTACAATAGAAAGGAGAATGCGAGAAAGGTTTCCCAAATGCCAAATCTTGCATCATCTCAACTTGGAAGAGCCATCAACTGGTTTGTTGAGAGTGATAGTCCCGGTCCTGGAGACCATCGCAACGAGAACTTTTCTGAAAAATATTGTGTGTTGAGGAAAAGAATTGAAGAGACCATCTTTTCCAGGAAAGAAGAGGCGGTACTGCAGTTTCAGAATTCTGCTGCAATCCAAGAAGATGGTTGCTCAATTAAAACTTTACACATCCCTGGTTCTGATATTCATGATTCTAATGATAGTGAATCAACAATATCAATCAAACTTGAAACTATTGATCCATCAGTCCCTCCAATGGGAATGAAATCTGGTGTTCTAAAGCCTCTTATTTTCGCTGAACGTATTACTAGCTTGAAATTGGAACAATCTCACGAAGAAATCAAATTATTTGCCGACTTGCCTTCCTTAACTGATGGAAGTAATTTTAGCCCTTCTTCTTTTGCTGTAAATAGTACTCTTGCTCAGGTTATGGAACAGTGCTATACAGAGAATGAAATAATCAGAAAGGGCCAATCAACTAGTGCTGACTCTCTTTTTGGAGTATCAACTAGAGAAGATATTTATACATTTTATGACGCAAATGCAAATTCTGGTGGCCAAAGAACACATTCATATGCTTCTTTAACCAATAATTCTGGATTTTCTAAATTGAGGGCTAATTCTGCTTTCCAAGAAGCAGACTTGACAGCACATGTTTCTCTTCAGACAGATGGCCAGGATAAAAGAAATATAAATGTTGCAAGTTATAAGGAAAATCTTCCACGGGGAATAAAAAAGTCAGGAGAAGGTACTGGGTTTTCAAGCCGTAATGAAATAGCACAGCTGATGCAAAAAAGTAATGAACTTTTGCGTGAGTTGCCTCACCCAAATGGAGTACACATCAATGAGAAAAGGAAGCCGACAGAGCAGTTAAGAACCTACCATCGTTTGCTAAAAGAGGGGAGGTTAAGAGACTGTGTAGAATTACTCGAAGAAATGGATAGACTGGGATTTTTAGACATGAATAAGATATATCATGGAAGGTTTTTTGATAGTTGTAAAAGTAAAAGGGCAGTTGAAGAAGCTTTTCGTTTCAGCAACTTGATTCACAGCAGAACGCTGAGTACATATAACATGCTTATGTCTGTTTGTGCAAGTTCTCAGGATTCTGAGGGGGCTTTTCAAGTTATGCGACAAGTCCAAAAATGTGGAATGAAAGCTGATTGTAAACTTTACACTACTTTAATCTCAACATGTGCAAAATGTGGAAAAGTTGAGGCAATGTTTGAAGTATTCCATGGAATGGTTAATTCTGGAGTGGAACCTAATCTTCACACATACGGGGCACTAATTGATGGTTGTGCCAAAGCTGGTCAAGTGGCCAAGGCATTTGGCGTGTATGGAATGATGAGGTCGAAGAAAGTGAAGCCAGACCGTGTTATATTCAATGCTCTAATTTCTGCATGCGGGCAATCTGGAGCAGTGGATCGAGCCTTTGAAGTAATTGAGGAAATGAGGGCTGAGGCACAGCCTATTGACCCTGATCACGTAACTGTTGGTGCCTTGTTAAGAGCATGTGCACATGCTGGTCAGGTTGATCGAGCACGAGAAGCATATAAGATGATCCATAAATATAAAATGTTTCTCAGCGCACTAATAGATGTTGCAGGGCATGCTGCGAAACTGGATGATGCCTTTGCGATCTTGCTAGAAGCCAGGAATTCAGGACTTGATGTTGGCATTATATCCTATAGCTCATTGATGGGAGCCTGTAGTAATGCAAAAAATTGGCAAAGAGGATTACAGCTATATGAGGATCTCAAGTCAATGAAGTTGAAACTCACAGTTCCAACCACTAATGCTTTAATAACTGCCCTGTGCGATGGGGACCAACTGCACAAAGCCGTAGAGGTTCTATATGAAATGAATGGACTAGGACTGAGCCCAAACAGTATCACATACTCCTTACTTTTGGTCGCAAGCGAGAGAAAGAACGAAATAGAAATTGGGCTCCGCCTTTTTTCTCAAGCTGAAAAGGATGGGATTGCACTTAACCTAACCATGTCTAGATGTATAATTGGAATGTGCTTTCAAAGATTTGTGATGGCATGTACACTCGGTGAAGCTGTGATATCTAAGGAGTCAGGACGACCTAAGCTTGACAATGAATGGACATCTGTGGCCTTAATGAGATATAGAGCAATCATTACTGCTGGTGTAACACCTAGCTGTGAAGTTTTGTCCCAAGTTTTAGGTTGCCTGCAGCTCCCTCGTGATTTAACTTTGAAACAAAGACTCATTGAAAACATTGGAGTAAGTGTGGATGTATCAAGATGCTCAAATCTCTCGTCCTTGATAGATGGATTTGGCGAATACGACCCTCGCGCTTGTTCACTGGTGGAGGAAGCTGCTTCGCTTGGCGTTTTACCTTGTATCTCTCTAAAAAAGAGTTCAATTGTCATCGATGCAAGAAATTTGGAGACTCACTCCGCTGAGGTTTACATCTTGACAGTTTTGAAAGGTCTCAAACATCGCCTTGCTGCTGGTAGGGCAAGGTTACCAACCATAACGATTTTAGTTCCGGTGGAGACGACAAAATTTGTATCCATCAAAGGGAAGAAAAACATCAATCTTGCAGGAAGGGTCGGTCAAGCAATTGCAGCAATGTTGAGACGACTCGAAATTCCTTTCCATGGAAATGAATCGAGTGGAAAAATCCGAGTCAATGGATTGTCGTTGAGAAGGTGGTTTCAGCCTAAACTCACCTCTCCGTTCATCGGAAAACCAGGAGAGTTGGGTTCATCCTTCTCACGGCTTGGGACAGGAATCAGTTTTCAGCAACGTGTCATCCGAACGGATAGTCTTTCACTGGACTGA 3180 41.82 MDVSFSAKPRTLSLTSCPSFSPSKLTTVRRQFLGSSQSLRPPIGLHSRRKSSGLRDAHPPLVRASLDFNSILNAVAVVTFSAVSVVYWSHYNRKENARKVSQMPNLASSQLGRAINWFVESDSPGPGDHRNENFSEKYCVLRKRIEETIFSRKEEAVLQFQNSAAIQEDGCSIKTLHIPGSDIHDSNDSESTISIKLETIDPSVPPMGMKSGVLKPLIFAERITSLKLEQSHEEIKLFADLPSLTDGSNFSPSSFAVNSTLAQVMEQCYTENEIIRKGQSTSADSLFGVSTREDIYTFYDANANSGGQRTHSYASLTNNSGFSKLRANSAFQEADLTAHVSLQTDGQDKRNINVASYKENLPRGIKKSGEGTGFSSRNEIAQLMQKSNELLRELPHPNGVHINEKRKPTEQLRTYHRLLKEGRLRDCVELLEEMDRLGFLDMNKIYHGRFFDSCKSKRAVEEAFRFSNLIHSRTLSTYNMLMSVCASSQDSEGAFQVMRQVQKCGMKADCKLYTTLISTCAKCGKVEAMFEVFHGMVNSGVEPNLHTYGALIDGCAKAGQVAKAFGVYGMMRSKKVKPDRVIFNALISACGQSGAVDRAFEVIEEMRAEAQPIDPDHVTVGALLRACAHAGQVDRAREAYKMIHKYKMFLSALIDVAGHAAKLDDAFAILLEARNSGLDVGIISYSSLMGACSNAKNWQRGLQLYEDLKSMKLKLTVPTTNALITALCDGDQLHKAVEVLYEMNGLGLSPNSITYSLLLVASERKNEIEIGLRLFSQAEKDGIALNLTMSRCIIGMCFQRFVMACTLGEAVISKESGRPKLDNEWTSVALMRYRAIITAGVTPSCEVLSQVLGCLQLPRDLTLKQRLIENIGVSVDVSRCSNLSSLIDGFGEYDPRACSLVEEAASLGVLPCISLKKSSIVIDARNLETHSAEVYILTVLKGLKHRLAAGRARLPTITILVPVETTKFVSIKGKKNINLAGRVGQAIAAMLRRLEIPFHGNESSGKIRVNGLSLRRWFQPKLTSPFIGKPGELGSSFSRLGTGISFQQRVIRTDSLSLD 1059
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19199733 19215523 - Bda029640.1 Bda08g00972 11828

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00972 1059 MobiDBLite consensus disorder prediction 37 56 - -
Bda08g00972 1059 Pfam PPR repeat family 717 759 IPR002885 -
Bda08g00972 1059 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 681 715 IPR002885 -
Bda08g00972 1059 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 509 543 IPR002885 -
Bda08g00972 1059 Gene3D Tetratricopeptide repeat domain 650 818 IPR011990 GO:0005515
Bda08g00972 1059 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC 258 647 - -
Bda08g00972 1059 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC 647 1059 - -
Bda08g00972 1059 TIGRFAM PPR: pentatricopeptide repeat domain 512 544 IPR002885 -
Bda08g00972 1059 TIGRFAM PPR: pentatricopeptide repeat domain 581 608 IPR002885 -
Bda08g00972 1059 TIGRFAM PPR: pentatricopeptide repeat domain 477 510 IPR002885 -
Bda08g00972 1059 TIGRFAM PPR: pentatricopeptide repeat domain 719 751 IPR002885 -
Bda08g00972 1059 TIGRFAM PPR: pentatricopeptide repeat domain 546 579 IPR002885 -
Bda08g00972 1059 TIGRFAM PPR: pentatricopeptide repeat domain 683 716 IPR002885 -
Bda08g00972 1059 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 544 578 IPR002885 -
Bda08g00972 1059 Pfam Pentacotripeptide-repeat region of PRORP 476 647 IPR033443 -
Bda08g00972 1059 Gene3D Tetratricopeptide repeat domain 540 649 IPR011990 GO:0005515
Bda08g00972 1059 Pfam PPR repeat 683 711 IPR002885 -
Bda08g00972 1059 Pfam PPR repeat 418 439 IPR002885 -
Bda08g00972 1059 Gene3D Tetratricopeptide repeat domain 382 539 IPR011990 GO:0005515
Bda08g00972 1059 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 474 508 IPR002885 -
Bda08g00972 1059 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 579 613 IPR002885 -
Bda08g00972 1059 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 716 750 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00972 - - - qsu:112003578 1142.49
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00972 Bda-Chr8:19199733 Bda13g01810 Bda-Chr13:41947373 4.02E-09 dispersed
Bda08g00972 Bda-Chr8:19199733 Bda10g00563 Bda-Chr10:39624188 1.30E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g85 . . . Bda08g00972 . . Bma05g00408 . . . Cma02g00333 Cma20g00774 Car02g00214 Car20g00677 . . . . . . . . . . . . . . . . . . . . . Lsi10g00458 . Chy11g00302 . . . . . . . . . Sed01g0228 Cmo02g00330 Cmo20g00774 . . . . Cpe16g00291 Cpe05g01307 Bhi10g01901 Tan05g1200 Cmetu11g2217 . Hepe08g0952 . . . . . . . . . . Csa02g01347 . Cme11g00424
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008629 1 2 0 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00972 Bda_Chr08 FPKM 6.661911 7.426907 30.908161 29.880087 11.293111 10.645401 10.667319 25.879942 25.142084