Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00974 ATGGCTGCCATTTCCGCCAAACACTCGTCCGTATCGTCCCCTCACTTATTGAAGGACGCTCACCCTTTGATCCCCGTGAAAGCTTCTCTTTCCTTCCCCTGCAAAACCCTCCCTAAGCCCTCTCCTTCCTCTTTCAAAGCTCCGTTCTCTCGCTTCACATACATCTCGCAAACCAATGAGAGCCGTCTCGTAGTTGCCGTCAAAAATCCTATCAGAGACCATGTCTCAGCGTACAACTCCGGCCCGGATGGAGGTTCCGTCTTTTATGATGATGATGATGAAAAGCCCCGCGAGGAGTGCGGCGTGGTTGGAATTTACGGTGACCCCGAAGCCTCTCGTTTGTGTTATTTGGCACTTCACGCTCTCCAGCACCGTGGTCAGGAGGGCGCCGGTATTGTGTCTGTGAACGAAAACGTTCTTCAATCGGTGACCGGCGTTGGTCTAGTTTCCGACGTCTTCAACCAGACGAAGCTCGACCAATTGCGGGGTGATTCCGCTATAGGGCATGTCCGCTACTCCACTGCAGGGTCTTCCATGCTCAAGAACGTCCAGCCCTTCGTCGCAGGTTACAGATTTGGCTCCGTTGGGGTTGCCCACAATGGTAATTTGGTCAATTATCGTTCCCTTAGAGCGAAGCTTGAGGAAAACGGTTCCATCTTTAATACTAGCTCCGACACAGAAGTGGTTCTCCACCTCATTGCAATTTCTAAGCACAGGCCTTTTCTGTTGAGGATTGTGGATGCATGCGAGCAGCTTGAGGGGGCATACTCGATGGTTTTCATTACAGAGGACAAGTTGTTCGCCGTGCGTGACCCGTTTGGTTTTAGGCCTTTAGTCATGGGTAGGAGAAGCAACGGAGCAGTTGTTTTTGCCTCTGAAACTTGTGCACTTGATTTGATAGAGGCCACATACGAGAGAGAAGTTTATCCTGGCGAGGTTGTGGTGGTTGATAAATCTGGCGTTCAATCCCTTTGTCTAATGGCTCATCCTCAACAAAAAGCCTGCATCTTTGAGCATATATACTTTGCTCTCCCTAACTCGGTTGTTTTTGGCCGATCAGTATACGAGTCTCGCCGTGCTTTTGGGGAAATACTTGCAACGGAAGCCCCAGTTGACTGCGATGTCGTGATTGCAGTTCCAGATTCAGGGGTGGTAGCTGCGCTCGGCTATGCTGCTAAAGCAGGAGTGGCTTTTCAGCAGGGGTTGATTCGATCTCACTATGTTGGGAGAACTTTCATAGAGCCATCTCAGAAGATTAGGGACTTTGGAGTGAAGCTCAAGCTCTCACCAGTCAGGGCTGTTTTGGAAGGCAAGAGGGTCGTGGTTGTAGACGATTCGATTGTGAGAGGAACCACATCTTCTAAAATTGTGAGGTTGATCAAAGAAGCTGGAGCAAAGGAGGTCCATATGAGGATAGCAAGTCCTCCAATTATTGGCTCTTGCTATTACGGAGTAGACACACCAAGCTCAGAGGAGTTGATTTCTAATAGGATGAGTGTTAAGGAGATTAGGGAGTTTATTGGGTGTGATTCGCTTGCCTTTCTTCCATTCAATAGCTTGAAGAAGCTTTTAGGCAGTGATTCTCCCAACTATTGCTATGCCTGTTTTTCTGGTCATTATCCAGTTGAACCCAGAGAGGTTAAAGTGAAACGGGTTGGCGATTTTGTAGATGACGGGTTAAATGGAAGCTTAGAATCCATTGATGGAGGCTGGGTCCAAGCAAATCGAAATCAGAAAGTAGAAGCTTAG 1749 48.48 MAAISAKHSSVSSPHLLKDAHPLIPVKASLSFPCKTLPKPSPSSFKAPFSRFTYISQTNESRLVVAVKNPIRDHVSAYNSGPDGGSVFYDDDDEKPREECGVVGIYGDPEASRLCYLALHALQHRGQEGAGIVSVNENVLQSVTGVGLVSDVFNQTKLDQLRGDSAIGHVRYSTAGSSMLKNVQPFVAGYRFGSVGVAHNGNLVNYRSLRAKLEENGSIFNTSSDTEVVLHLIAISKHRPFLLRIVDACEQLEGAYSMVFITEDKLFAVRDPFGFRPLVMGRRSNGAVVFASETCALDLIEATYEREVYPGEVVVVDKSGVQSLCLMAHPQQKACIFEHIYFALPNSVVFGRSVYESRRAFGEILATEAPVDCDVVIAVPDSGVVAALGYAAKAGVAFQQGLIRSHYVGRTFIEPSQKIRDFGVKLKLSPVRAVLEGKRVVVVDDSIVRGTTSSKIVRLIKEAGAKEVHMRIASPPIIGSCYYGVDTPSSEELISNRMSVKEIREFIGCDSLAFLPFNSLKKLLGSDSPNYCYACFSGHYPVEPREVKVKRVGDFVDDGLNGSLESIDGGWVQANRNQKVEA 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19283426 19285174 - Bda029642.1 Bda08g00974 11830

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00974 582 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 100 541 IPR029055 -
Bda08g00974 582 SUPERFAMILY PRTase-like 335 546 IPR029057 -
Bda08g00974 582 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 45 572 - -
Bda08g00974 582 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 100 319 IPR017932 -
Bda08g00974 582 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 100 323 IPR029055 -
Bda08g00974 582 Pfam Phosphoribosyl transferase domain 358 469 IPR000836 -
Bda08g00974 582 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 2, CHLOROPLASTIC 45 572 - -
Bda08g00974 582 CDD GPATase_N 100 350 IPR035584 -
Bda08g00974 582 Hamap Amidophosphoribosyltransferase [purF]. 99 540 IPR005854 GO:0004044|GO:0009113
Bda08g00974 582 Gene3D - 359 523 IPR029057 -
Bda08g00974 582 CDD PRTases_typeI 362 473 IPR000836 -
Bda08g00974 582 TIGRFAM purF: amidophosphoribosyltransferase 100 541 IPR005854 GO:0004044|GO:0009113
Bda08g00974 582 Pfam Glutamine amidotransferase domain 180 297 IPR017932 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00974 K00764 purF, PPAT; amidophosphoribosyltransferase [EC:2.4.2.14] - zju:107426528 928.702
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00974 Bda-Chr8:19283426 Bda13g00855 Bda-Chr13:10131513 1.13E-16 dispersed
Bda08g00971 Bda-Chr8:19194029 Bda08g00974 Bda-Chr8:19283426 0 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda13g01256 BCT 33 188 PRT Gene Family AT1G80050 74.4 1.4e-63 239.2
Bda08g00567 . 30 180 PRT Gene Family AT1G80050 75.5 2.6e-62 235.0
Bda08g01357 . 27 177 PRT Gene Family AT1G80050 70.2 2.5e-57 218.4
Bda01g01004 BCT,CCT 33 156 PRT Gene Family AT1G80050 57.8 8.0e-43 170.2
Bda13g01256 BCT 1 148 PRT Gene Family AT5G11160 84.5 2.4e-66 248.4
Bda08g00567 . 8 145 PRT Gene Family AT5G11160 73.9 3.6e-54 208.0
Bda08g01357 . 5 142 PRT Gene Family AT5G11160 71.7 1.4e-53 206.1
Bda01g01004 BCT,CCT 1 118 PRT Gene Family AT5G11160 63.5 1.8e-42 169.1
Bda06g00037 CCT 8 119 PRT Gene Family AT5G11160 69.6 4.0e-37 151.4
Bda08g01357 . 4 179 PRT Gene Family AT1G27450 82.4 7.9e-79 290.0
Bda08g00567 . 7 181 PRT Gene Family AT1G27450 73.1 1.2e-71 266.2
Bda13g01256 BCT 11 183 PRT Gene Family AT1G27450 71.7 4.3e-69 257.7
Bda01g01004 BCT,CCT 11 153 PRT Gene Family AT1G27450 54.9 7.9e-47 183.7
Bda06g00037 CCT 7 119 PRT Gene Family AT1G27450 73.5 5.9e-42 167.5
Bda08g00974 . 90 573 PRT Gene Family AT2G16570 84.6 7.2e-240 826.6
Bda08g00971 . 65 522 PRT Gene Family AT2G16570 81.9 5.7e-221 763.8
Bda08g00974 . 90 573 PRT Gene Family AT4G34740 85.6 1.0e-241 832.8
Bda08g00971 . 67 522 PRT Gene Family AT4G34740 83.2 3.3e-221 764.6
Bda08g00974 . 91 546 PRT Gene Family AT4G38880 75.1 2.4e-197 685.3
Bda08g00971 . 60 520 PRT Gene Family AT4G38880 73.0 4.3e-194 674.5
Bda08g01357 . 4 179 PRT Gene Family AT1G27450 82.4 7.9e-79 290.0
Bda08g00567 . 7 181 PRT Gene Family AT1G27450 73.1 1.2e-71 266.2
Bda13g01256 BCT 11 183 PRT Gene Family AT1G27450 71.7 4.3e-69 257.7
Bda01g01004 BCT,CCT 11 153 PRT Gene Family AT1G27450 54.9 7.9e-47 183.7
Bda06g00037 CCT 7 119 PRT Gene Family AT1G27450 73.5 5.9e-42 167.5
Bda13g01256 BCT 33 188 PRT Gene Family AT1G80050 74.4 1.4e-63 239.2
Bda08g00567 . 30 180 PRT Gene Family AT1G80050 75.5 2.6e-62 235.0
Bda08g01357 . 27 177 PRT Gene Family AT1G80050 70.2 2.5e-57 218.4
Bda01g01004 BCT,CCT 33 156 PRT Gene Family AT1G80050 57.8 8.0e-43 170.2
Bda06g00037 CCT 5 98 PRT Gene Family AT4G22570 85.1 1.6e-44 175.3
Bda08g00567 . 5 97 PRT Gene Family AT4G22570 82.8 2.0e-42 168.3
Bda08g01357 . 4 94 PRT Gene Family AT4G22570 81.3 3.9e-38 154.1
Bda13g01256 BCT 11 100 PRT Gene Family AT4G22570 77.8 3.3e-37 151.0
Bda06g00037 CCT 1 96 PRT Gene Family AT4G12440 83.3 7.7e-41 162.9
Bda08g00567 . 1 96 PRT Gene Family AT4G12440 81.3 1.1e-39 159.1
Bda13g01256 BCT 1 148 PRT Gene Family AT5G11160 84.5 2.4e-66 248.4
Bda08g00567 . 8 145 PRT Gene Family AT5G11160 73.9 3.6e-54 208.0
Bda08g01357 . 5 142 PRT Gene Family AT5G11160 71.7 1.4e-53 206.1
Bda01g01004 BCT,CCT 1 118 PRT Gene Family AT5G11160 63.5 1.8e-42 169.1
Bda06g00037 CCT 8 119 PRT Gene Family AT5G11160 69.6 4.0e-37 151.4
Bda01g00859 . 1 186 PRT Gene Family AT1G71750 61.4 6.6e-63 237.3
Bda09g00447 . 16 470 PRT Gene Family AT1G55810 82.2 1.1e-219 759.2
Bda07g00427 . 28 502 PRT Gene Family AT1G55810 80.0 6.2e-218 753.4
Bda13g01653 . 61 483 PRT Gene Family AT1G55810 78.3 2.5e-195 678.3
Bda09g00447 . 67 474 PRT Gene Family AT3G27440 75.2 8.6e-182 633.3
Bda13g01653 . 81 483 PRT Gene Family AT3G27440 75.4 9.9e-178 619.8
Bda07g00427 . 79 509 PRT Gene Family AT3G27440 71.2 3.2e-176 614.8
Bda13g01653 . 1 483 PRT Gene Family AT3G27190 83.4 2.0e-235 811.6
Bda09g00447 . 3 469 PRT Gene Family AT3G27190 74.7 1.4e-207 719.2
Bda07g00427 . 15 501 PRT Gene Family AT3G27190 70.9 4.8e-200 694.1
Bda05g00954 . 1 235 PRT Gene Family AT3G53900 75.0 2.8e-102 368.6
Bda09g00447 . 1 470 PRT Gene Family AT4G26510 83.7 1.0e-231 799.3
Bda07g00427 . 13 502 PRT Gene Family AT4G26510 80.1 2.9e-226 781.2
Bda13g01653 . 11 483 PRT Gene Family AT4G26510 74.4 3.7e-205 711.1
Bda13g01653 . 1 483 PRT Gene Family AT5G40870 84.7 7.6e-238 819.7
Bda09g00447 . 3 472 PRT Gene Family AT5G40870 73.4 9.0e-207 716.5
Bda07g00427 . 15 504 PRT Gene Family AT5G40870 70.5 4.8e-200 694.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005155 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00974 Bda_Chr08 FPKM 1.029776 0.892093 238.72142 236.439651 93.269951 96.677673 97.608574 0.0 0.0