Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00985 ATGAGGCAGAGTCATCATGTATTAAATAATAATAATAGAACTGTTCATGAGAGTGTAAAGAAACAGCCAGGGACATTTCAACCGGAGATTCCACGAAGAAGGTTAACGGAAGCCGAGATGCAAATAAGGAGGGACAAAGGGCTTTGTTACAGGTGTGATGAGAAATTTAGTGTTGGACACCAGTACAAAAAAAAAATGTTACAAGTTTTAATAATGGAAGATGGAGAAGTTGATGACATGATTGCTGGGAGTGATGATCCAGCGGCTGATCTTGAGATTTCGGGTTCAGTGGAATTGTCGTTGAACTCCATCACGGGAATACCCACACCGCGAACAGTACGATTAAAAGGAAAAATTAGAGACAAGGAGGTAGTGGTAATGATTGATAGCGGTGCAACCCATAATTTCATAACAAGCAAATTAGTTCGTGAGCTAAAGTTACCCATTCATAATACAGTACCGTACGAGATATCCATGGGTAATGGCAGATCGATGGGCAGATCGGGTATATGTAAGAACTTGTTACTTGAGTTGCCGGAACTAGAAATCATGGAGGAATTCCTTCCAATTGAATTGAGAAATACTGATGTAATATTGGGTATGATGTGGTTAGAGTCAGTGGGGGATATGTATGTTGATTGGAAAAGGAAGATAATGAAATGGAAAGTTGATCAGAAAATGGTAGAAGTAAAAGCGGATCCAAGTTTAGATCGAAAACTTATTTCCTTGAAACTCATGATGAAAACTTTTATGAGAGAGAGCTTATGGCTATTGTACTTGCTATTCAAAAATGACGACCTTATTTTTTCAGATAGAGATAAAATCTTTGTCAGCTCATTTTGGAAGGAACTGTTGCGTCTACATGGAACTACATTGAAATTCAGTTCAGCTTATCATCCACAAACAGATGGGCAATCTGAAGTGGTTAATAGGACGCTAGAGACGTATTTAAGGATCTGTTTGAAGGCAAATGAAAGAGATGTTTACGATTTCTTCTCAAGAGCTGGCAAGGTTCGAGATGTACGCCTCATAATGGATCGTAATTCAAGGCGTTCTAAGGGATTTGGGTATATAGAGTTCTATGATGCAATGTCAGTCCCTATGGCAATAGCACTTTCTGGTCAGATACTACTTAGTCAACCTGTGATGGTGAAGCCATCAGAAGCTGAAAAGAACCAGGCTCACTCAGCATCGGCAACTGGTGGATCAGGTGGGCTTATAGGTCCCTATTCAGGTGGAGCCAGAAGGTTGTATGTCGGAAATCTGCATACTAGTATAACAGAAGATAACCTTCGTCAGGTCTTTGGAGCATTTGGTTCCGTGGAGCTTGTGCAGTTGCCTGTTGATGAAACTGGGCATTGCAAAGGGTTCGGTTTTGTTCAGTTTGCGCGCCTGGAAGATGCTAGAAATGCATTGAGTTTGAATGGTCAGTTAGATATTGCTGGTCGGACGATAAAGGTGTCTGCTGTTACTGATCAAGTGGGATCACAGGATCTTGAAAAAAATACCGGTGATTTTGATGATGACGAAAGTGGAAACTTGTCATTAGATGCACGTTCTCGAGCACTTTTAATGCAGAAATTGGATCGAAGTGGCACTGCTTCTAGCATTACTGGTTCAATCCCTGTTGGTAATAGCAATGCTCTCTCTCTTCCAATATCACCAATTGTCGGAACGGCACCAATGATTTCTTCTCTTGCTTCTCTTCCTGCTCTCACTGGACTTAGTGGTGCTGATTTTCAATTTCCTGCTACTACAATTCCTTCACTTGATACAATTGGTGTTCCGAGCAATTGTTTATTACTAAAGAATATGTTCGATCCGTCAGTTGAGATAGAGCCAGATTTTGATATGGATATTAAAGATGACGTTCAAGATGAATGTTCTAAGTTCGGAAACATAAAACACATCCACGTGGACAAGAATACTGCTGGTTTTGTCTACTTGAAATTTGAACACGCACAATCAGCAATTGATGCACAACGAAGTCTCCATGGAAGATGGTTTGCTGGGAAAATGATCACCGCAACTTTCATGGTAATGACCTCTAAATCTCAATATTTTCACTTAATTTCTACATTCGCTTGCTTATATTTATTCATGCAGGTTCCTCAGTCGTACGATTCGAAATTCCCCGAAAGAAAGTAA 2148 40.22 MRQSHHVLNNNNRTVHESVKKQPGTFQPEIPRRRLTEAEMQIRRDKGLCYRCDEKFSVGHQYKKKMLQVLIMEDGEVDDMIAGSDDPAADLEISGSVELSLNSITGIPTPRTVRLKGKIRDKEVVVMIDSGATHNFITSKLVRELKLPIHNTVPYEISMGNGRSMGRSGICKNLLLELPELEIMEEFLPIELRNTDVILGMMWLESVGDMYVDWKRKIMKWKVDQKMVEVKADPSLDRKLISLKLMMKTFMRESLWLLYLLFKNDDLIFSDRDKIFVSSFWKELLRLHGTTLKFSSAYHPQTDGQSEVVNRTLETYLRICLKANERDVYDFFSRAGKVRDVRLIMDRNSRRSKGFGYIEFYDAMSVPMAIALSGQILLSQPVMVKPSEAEKNQAHSASATGGSGGLIGPYSGGARRLYVGNLHTSITEDNLRQVFGAFGSVELVQLPVDETGHCKGFGFVQFARLEDARNALSLNGQLDIAGRTIKVSAVTDQVGSQDLEKNTGDFDDDESGNLSLDARSRALLMQKLDRSGTASSITGSIPVGNSNALSLPISPIVGTAPMISSLASLPALTGLSGADFQFPATTIPSLDTIGVPSNCLLLKNMFDPSVEIEPDFDMDIKDDVQDECSKFGNIKHIHVDKNTAGFVYLKFEHAQSAIDAQRSLHGRWFAGKMITATFMVMTSKSQYFHLISTFACLYLFMQVPQSYDSKFPERK 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19897025 19915539 + Bda029659.2 Bda08g00985 11841

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00985 715 SUPERFAMILY Ribonuclease H-like 266 327 IPR012337 -
Bda08g00985 715 PANTHER RNA-BINDING PROTEIN 39 ISOFORM X1 308 681 - -
Bda08g00985 715 SUPERFAMILY RNA-binding domain, RBD 414 494 IPR035979 GO:0003676
Bda08g00985 715 SMART rrm2_1 416 488 IPR003954 GO:0003676
Bda08g00985 715 SMART rrm2_1 599 677 IPR003954 GO:0003676
Bda08g00985 715 CDD retropepsin_like 115 205 - -
Bda08g00985 715 CDD RRM1_RBM39_like 319 385 - -
Bda08g00985 715 PANTHER TRANSFORMER-2-RELATED 308 681 - -
Bda08g00985 715 Gene3D - 318 399 IPR012677 -
Bda08g00985 715 MobiDBLite consensus disorder prediction 1 26 - -
Bda08g00985 715 MobiDBLite consensus disorder prediction 1 21 - -
Bda08g00985 715 TIGRFAM SF-CC1: splicing factor, CC1-like family 317 682 IPR006509 GO:0003723|GO:0005634|GO:0006397
Bda08g00985 715 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 417 486 IPR000504 GO:0003723
Bda08g00985 715 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 622 674 IPR000504 GO:0003723
Bda08g00985 715 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 323 380 IPR000504 GO:0003723
Bda08g00985 715 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 389 IPR000504 GO:0003723
Bda08g00985 715 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 506 616 IPR029123 -
Bda08g00985 715 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 126 137 IPR001969 GO:0004190|GO:0006508
Bda08g00985 715 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 598 681 IPR000504 GO:0003723
Bda08g00985 715 Gene3D - 593 692 IPR012677 -
Bda08g00985 715 SUPERFAMILY Acid proteases 111 208 IPR021109 -
Bda08g00985 715 SUPERFAMILY RNA-binding domain, RBD 595 678 IPR035979 GO:0003676
Bda08g00985 715 Gene3D Acid Proteases 106 231 IPR021109 -
Bda08g00985 715 SUPERFAMILY RNA-binding domain, RBD 322 413 IPR035979 GO:0003676
Bda08g00985 715 ProSiteProfiles Integrase catalytic domain profile. 185 375 IPR001584 GO:0015074
Bda08g00985 715 SMART rrm1_1 416 488 IPR000504 GO:0003723
Bda08g00985 715 SMART rrm1_1 599 677 IPR000504 GO:0003723
Bda08g00985 715 SMART rrm1_1 314 385 IPR000504 GO:0003723
Bda08g00985 715 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 415 492 IPR000504 GO:0003723
Bda08g00985 715 CDD RRM3_RBM39_like 597 679 - -
Bda08g00985 715 Pfam Retroviral aspartyl protease 123 218 - -
Bda08g00985 715 Gene3D - 406 498 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00985 K13091 RBM23_39; RNA-binding protein 23/39 - mnt:21391727 558.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00354 Bda-Chr4:49272683 Bda08g00985 Bda-Chr8:19897025 2.08E-11 dispersed
Bda07g00910 Bda-Chr7:10679476 Bda08g00985 Bda-Chr8:19897025 8.54E-09 dispersed
Bda08g00985 Bda-Chr8:19897025 Bda13g01766 Bda-Chr13:40967204 2.68E-96 dispersed
Bda12g00131 Bda-Chr12:1192208 Bda08g00985 Bda-Chr8:19897025 8.45E-10 dispersed
Bda14g01352 Bda-Chr14:15818990 Bda08g00985 Bda-Chr8:19897025 3.98E-14 dispersed
Bda08g00985 Bda-Chr8:19897025 Bda09g01228 Bda-Chr9:43685555 1.33E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g183 . . . Bda08g00985 . . Bma05g00377 . . . . . . . Sed05g2245 . . Bhi05g01691 Tan02g0661 Cmetu01g1207 . Hepe02g0413 . . Cla02g00412 Cam02g0421 Cec02g0420 Cco02g0438 Clacu02g0423 Cmu02g0418 Cre02g0752 Cone12ag1242 Cone8ag1298 . . . Csa07g00115 . Cme01g01244 . . . . . . . . . . . . . . Car19g00582 . . . . . . . . . . . . . . . . . . Chy01g00667 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002135 1 5 1 2 2 2 3 2 2 2 2 2 2 2 2 3 2 4 3 2 2 2 2 1 2 1 2 3 2 2 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda08g00985 Bda_Chr08 FPKM 5.529862 9.954352 6.604749 9.089402 4.629224 2.914892 6.078431 5.64318 5.378356